Factsheet for Os06t0181566-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61699	Soybean	cytosol	98.04	98.04
KRH52367	Soybean	cytosol	98.04	98.04
Zm00001d018383_P002	Maize	cytosol	98.04	98.04
KRH37867	Soybean	cytosol	98.04	98.04
KRH12895	Soybean	cytosol	98.04	98.04
Os02t0797200-01	Rice	cytosol	98.04	98.04
EES05958	Sorghum	cytosol	98.04	98.04
Os02t0796900-00	Rice	cytosol	96.08	98.0
GSMUA_Achr1P15810_001	Banana	cytosol	66.67	97.14
PGSC0003DMT400003718	Potato	cytosol	96.08	96.08
Solyc07g005050.2.1	Tomato	cytosol	94.12	94.12
AT2G25210.1	Thale cress	cytosol	78.43	90.91
AT4G31985.1	Thale cress	cytosol	90.2	90.2
KRH52368	Soybean	cytosol	96.08	89.09
CDY43252	Canola	cytosol	60.78	88.57
Bra032033.1-P	Field mustard	cytosol	90.2	88.46
Bra039161.1-P	Field mustard	cytosol	88.24	88.24
AT3G02190.1	Thale cress	cytosol	86.27	86.27
Bra023970.1-P	Field mustard	cytosol	88.24	81.82
VIT_11s0149g00220.t01	Wine grape	mitochondrion	96.08	81.67
Bra040064.1-P	Field mustard	cytosol	92.16	72.31
VIT_04s0008g06030.t01	Wine grape	cytosol	94.12	71.64
GSMUA_Achr3P13390_001	Banana	cytosol	96.08	67.12
VIT_11s0149g00240.t01	Wine grape	cytosol	94.12	61.54
CDY62505	Canola	cytosol, plastid	92.16	60.26
Solyc12g010350.1.1	Tomato	nucleus, unclear	94.12	56.47
Zm00001d052025_P001	Maize	mitochondrion	98.04	51.55

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	EntrezGene:9268459	EMBL:AK287753	ProteinID:BAD72315.1	ProteinID:BAD72572.1
ProteinID:BAH93365.1	ProteinID:BAS96472.1	EMBL:D28313	ProteinID:EAZ36044.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023626
HAMAP:MF_00629	EnsemblPlantsGene:Os06g0181566	EnsemblPlants:Os06t0181566-01	PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051
PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	UniProt:Q5SMI4	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf
SUPFAM:SSF48662	UniParc:UPI000046D48B	RefSeq:XP_015641439.1	:	:	:

Description

RPL39CSimilar to 60S ribosomal protein L39. (Os06t0181566-01)

Coordinates

chr6:-:4033605..4034172

Molecular Weight (calculated)

6485.1 Da

IEP (calculated)

12.621

GRAVY (calculated)

-1.408

Length

51 amino acids

Sequence
(BLAST)

1: MPSHKTFQIK KKLAKKMRQN RPIPYWIRMR TDNTIRYNAK RRHWRRTKLG F

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.