Factsheet for Os02t0797200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61699	Soybean	cytosol	100.0	100.0
Zm00001d045121_P001	Maize	cytosol	100.0	100.0
Os02t0796900-00	Rice	cytosol	98.04	100.0
KRH52367	Soybean	cytosol	100.0	100.0
KRH37867	Soybean	cytosol	100.0	100.0
KRH12895	Soybean	cytosol	100.0	100.0
Os06t0181566-01	Rice	plastid	98.04	98.04
GSMUA_Achr1P15810_001	Banana	cytosol	66.67	97.14
TraesCS7D01G147000.1	Wheat	cytosol	96.08	96.08
TraesCS7A01G145700.1	Wheat	cytosol	96.08	96.08
TraesCS6D01G343900.1	Wheat	cytosol	96.08	96.08
TraesCS6B01G393300.1	Wheat	cytosol	96.08	96.08
TraesCS6A01G360400.1	Wheat	cytosol	96.08	96.08
PGSC0003DMT400003718	Potato	cytosol	96.08	96.08
Solyc07g005050.2.1	Tomato	cytosol	94.12	94.12
KRH52368	Soybean	cytosol	98.04	90.91
AT2G25210.1	Thale cress	cytosol	78.43	90.91
AT4G31985.1	Thale cress	cytosol	90.2	90.2
CDY43252	Canola	cytosol	60.78	88.57
Bra032033.1-P	Field mustard	cytosol	90.2	88.46
Bra039161.1-P	Field mustard	cytosol	88.24	88.24
AT3G02190.1	Thale cress	cytosol	86.27	86.27
Bra023970.1-P	Field mustard	cytosol	88.24	81.82
VIT_11s0149g00220.t01	Wine grape	mitochondrion	96.08	81.67
Bra040064.1-P	Field mustard	cytosol	92.16	72.31
VIT_04s0008g06030.t01	Wine grape	cytosol	94.12	71.64
Zm00001d035838_P001	Maize	extracellular	98.04	69.44
GSMUA_Achr3P13390_001	Banana	cytosol	98.04	68.49
HORVU0Hr1G017360.1	Barley	mitochondrion	96.08	67.12
VIT_11s0149g00240.t01	Wine grape	cytosol	94.12	61.54
CDY62505	Canola	cytosol, plastid	92.16	60.26
Solyc12g010350.1.1	Tomato	nucleus, unclear	94.12	56.47
HORVU7Hr1G029860.1	Barley	plastid	96.08	39.84
OQU75968	Sorghum	cytosol	98.04	30.67

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	EntrezGene:4331011	EntrezGene:4331014	EMBL:AK120800	EMBL:AK243036
EMBL:AP014958	ProteinID:BAD19088.1	ProteinID:BAD19090.1	ProteinID:BAF10306.1	ProteinID:BAF10308.1	ProteinID:BAS81371.1
ProteinID:BAS81373.1	EMBL:D29725	ProteinID:EAZ24944.1	ProteinID:EAZ24946.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023626
HAMAP:MF_00629	EnsemblPlantsGene:Os02g0797200	EnsemblPlants:Os02t0797200-01	UniProt:P51426	PFAM:PD007914	PFAM:PF00832
ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	UniProt:Q6KAJ8	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39_CS
InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	UniParc:UPI0000134063	RefSeq:XP_015622685.1	RefSeq:XP_015622686.1	RefSeq:XP_015622687.1

Description

RPL39ASimilar to 60S ribosomal protein L39. (Os02t0797200-01)

Coordinates

chr2:+:33928348..33928995

Molecular Weight (calculated)

6513.2 Da

IEP (calculated)

12.695

GRAVY (calculated)

-1.427

Length

51 amino acids

Sequence
(BLAST)

1: MPSHKTFRIK KKLAKKMRQN RPIPYWIRMR TDNTIRYNAK RRHWRRTKLG F

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.