Factsheet for Bra040064.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002778.1-P
Bra013951.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31985.1	Bra013951.1-P	AT4G26110.1	21798944
AT4G31985.1	Bra002778.1-P	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G31985.1	Thale cress	cytosol	76.92	98.04
GSMUA_Achr1P15810_001	Banana	cytosol	52.31	97.14
Bra032033.1-P	Field mustard	cytosol	76.92	96.15
Solyc07g005050.2.1	Tomato	cytosol	73.85	94.12
Zm00001d045121_P001	Maize	cytosol	72.31	92.16
EES05958	Sorghum	cytosol	72.31	92.16
Zm00001d018383_P002	Maize	cytosol	72.31	92.16
Os06t0181566-01	Rice	plastid	72.31	92.16
Os02t0797200-01	Rice	cytosol	72.31	92.16
KRH12895	Soybean	cytosol	72.31	92.16
KRH37867	Soybean	cytosol	72.31	92.16
KRH52367	Soybean	cytosol	72.31	92.16
KRH61699	Soybean	cytosol	72.31	92.16
Os02t0796900-00	Rice	cytosol	70.77	92.0
Bra023970.1-P	Field mustard	cytosol	75.38	89.09
Bra039161.1-P	Field mustard	cytosol	69.23	88.24
TraesCS7D01G147000.1	Wheat	cytosol	69.23	88.24
TraesCS7A01G145700.1	Wheat	cytosol	69.23	88.24
TraesCS6D01G343900.1	Wheat	cytosol	69.23	88.24
TraesCS6B01G393300.1	Wheat	cytosol	69.23	88.24
TraesCS6A01G360400.1	Wheat	cytosol	69.23	88.24
KRH52368	Soybean	cytosol	70.77	83.64
VIT_11s0149g00220.t01	Wine grape	mitochondrion	75.38	81.67
VIT_04s0008g06030.t01	Wine grape	cytosol	72.31	70.15
GSMUA_Achr3P13390_001	Banana	cytosol	73.85	65.75
Zm00001d035838_P001	Maize	extracellular	70.77	63.89
HORVU0Hr1G017360.1	Barley	mitochondrion	69.23	61.64
VIT_11s0149g00240.t01	Wine grape	cytosol	73.85	61.54
PGSC0003DMT400030914	Potato	cytosol, golgi, mitochondrion, vacuole	53.85	60.34
Solyc12g010350.1.1	Tomato	nucleus, unclear	73.85	56.47
GSMUA_Achr7P19310_001	Banana	cytosol	73.85	53.93
Zm00001d052025_P001	Maize	mitochondrion	72.31	48.45
HORVU7Hr1G029860.1	Barley	plastid	69.23	36.59
OQU75968	Sorghum	cytosol	70.77	28.22

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	EnsemblPlantsGene:Bra040064	EnsemblPlants:Bra040064.1	EnsemblPlants:Bra040064.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023626	UniProt:M4FG39	PFAM:PD007914	PFAM:PF00832	PANTHER:PTHR19970
PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	UniParc:UPI0002546B38	:

Description

AT4G31985 (E=1e-015) | 60S ribosomal protein L39 (RPL39C)

Coordinates

chrA08:-:13213150..13213538

Molecular Weight (calculated)

8228.3 Da

IEP (calculated)

12.388

GRAVY (calculated)

-1.188

Length

65 amino acids

Sequence
(BLAST)

1: MPSHKSFMIK KKLAKKMRQN RPIPHWIRLR TDNTIRDSER VLKREMFCFR YNAKRRHWRR TKLGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.