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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, golgi, vacuole, cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 3
  • golgi 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, mitochondrion, vacuole
Any Predictor:cytosol, golgi, mitochondrion, plastid, vacuole
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:golgi
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400000751
PGSC0003DMT400055114

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G25210.1 PGSC0003DMT400000751 AT4G26110.1 21798944
AT2G25210.1 PGSC0003DMT400055114 AT4G26110.1 21798944
AT2G25210.1 PGSC0003DMT400000751 AT5G56950.1 21798944
AT2G25210.1 PGSC0003DMT400055114 AT5G56950.1 21798944
AT4G31985.1 PGSC0003DMT400000751 AT4G26110.1 21798944
AT4G31985.1 PGSC0003DMT400055114 AT4G26110.1 21798944
AT4G31985.1 PGSC0003DMT400000751 AT5G56950.1 21798944
AT4G31985.1 PGSC0003DMT400055114 AT5G56950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400003718 Potato cytosol 63.79 72.55
AT4G31985.1 Thale cress cytosol 58.62 66.67
Bra032033.1-P Field mustard cytosol 58.62 65.38
AT3G02190.1 Thale cress cytosol 56.9 64.71
Bra023970.1-P Field mustard cytosol 60.34 63.64
AT2G25210.1 Thale cress cytosol 46.55 61.36
Bra039161.1-P Field mustard cytosol 53.45 60.78
Bra040064.1-P Field mustard cytosol 60.34 53.85
CDY43252 Canola cytosol 31.03 51.43
CDY62505 Canola cytosol, plastid 60.34 44.87
Protein Annotations
Gene3D:1.10.1620.10EntrezGene:102586829EntrezGene:102600770MapMan:17.1.2.1.42GO:GO:0003674GO:GO:0003735
GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005840
GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020
GO:GO:0016021GO:GO:0019538InterPro:IPR023626UniProt:M1AUY6PFAM:PD007914PFAM:PF00832
EnsemblPlantsGene:PGSC0003DMG400011840PGSC:PGSC0003DMG400011840EnsemblPlants:PGSC0003DMT400030914PANTHER:PTHR19970PANTHER:PTHR19970:SF13InterPro:Ribosomal_L39
InterPro:Ribosomal_L39e_dom_sfSUPFAM:SSF48662TMHMM:TMhelixUniParc:UPI000294E936::
Description
60S ribosomal protein L39-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400011840]
Coordinates
chr7:-:278805..279066
Molecular Weight (calculated)
7277.0 Da
IEP (calculated)
10.814
GRAVY (calculated)
-0.360
Length
58 amino acids
Sequence
(BLAST)
1: MPSHKSFMIK KKLAKKQRQN RPIPYWIRMR TDNTIRYFTF LFVIFDYFFV YCVNFGDK
Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)
1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F
Arabidopsis Description
RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.