CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89363
CDX94372
CDY50005
CDY50468
CDY50472
CDY50473
CDY52429
CDY65997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25210.1	CDX89363	AT4G26110.1	21798944
AT2G25210.1	CDX94372	AT4G26110.1	21798944
AT2G25210.1	CDY50005	AT4G26110.1	21798944
AT2G25210.1	CDY52429	AT4G26110.1	21798944
AT2G25210.1	CDY65997	AT4G26110.1	21798944
AT2G25210.1	CDY50468	AT5G56950.1	21798944
AT2G25210.1	CDY50472	AT5G56950.1	21798944
AT2G25210.1	CDY50473	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G25210.1	Thale cress	cytosol	55.13	97.73
GSMUA_Achr1P15810_001	Banana	cytosol	43.59	97.14
Bra032033.1-P	Field mustard	cytosol	64.1	96.15
Solyc07g005050.2.1	Tomato	cytosol	61.54	94.12
Os02t0797200-01	Rice	cytosol	60.26	92.16
Zm00001d045121_P001	Maize	cytosol	60.26	92.16
Zm00001d018383_P002	Maize	cytosol	60.26	92.16
Os06t0181566-01	Rice	plastid	60.26	92.16
KRH61699	Soybean	cytosol	60.26	92.16
KRH52367	Soybean	cytosol	60.26	92.16
KRH12895	Soybean	cytosol	60.26	92.16
EES05958	Sorghum	cytosol	60.26	92.16
KRH37867	Soybean	cytosol	60.26	92.16
Os02t0796900-00	Rice	cytosol	58.97	92.0
CDY43252	Canola	cytosol	41.03	91.43
TraesCS6A01G360400.1	Wheat	cytosol	57.69	88.24
TraesCS7D01G147000.1	Wheat	cytosol	57.69	88.24
TraesCS7A01G145700.1	Wheat	cytosol	57.69	88.24
TraesCS6D01G343900.1	Wheat	cytosol	57.69	88.24
TraesCS6B01G393300.1	Wheat	cytosol	57.69	88.24
KRH52368	Soybean	cytosol	58.97	83.64
VIT_11s0149g00220.t01	Wine grape	mitochondrion	64.1	83.33
VIT_04s0008g06030.t01	Wine grape	cytosol	60.26	70.15
GSMUA_Achr3P13390_001	Banana	cytosol	65.38	69.86
VIT_11s0149g00240.t01	Wine grape	cytosol	65.38	65.38
Zm00001d035838_P001	Maize	extracellular	60.26	65.28
HORVU0Hr1G017360.1	Barley	mitochondrion	60.26	64.38
PGSC0003DMT400030914	Potato	cytosol, golgi, mitochondrion, vacuole	44.87	60.34
Solyc12g010350.1.1	Tomato	nucleus, unclear	65.38	60.0
GSMUA_Achr7P19310_001	Banana	cytosol	62.82	55.06
Zm00001d052025_P001	Maize	mitochondrion	61.54	49.48
HORVU7Hr1G029860.1	Barley	plastid	58.97	37.4
OQU75968	Sorghum	cytosol	58.97	28.22

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	GO:A0A078J798	UniProt:A0A078J798	EnsemblPlants:CDY62505	ProteinID:CDY62505
ProteinID:CDY62505.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00036349001	InterPro:IPR023626	HAMAP:MF_00629
PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39
InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	UniParc:UPI0004EEB2A9	:	:

Description

BnaC04g56360DBnaC04g56360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J798]

Coordinates

chrLK034154:-:19378..20153

Molecular Weight (calculated)

9357.6 Da

IEP (calculated)

12.699

GRAVY (calculated)

-0.910

Length

78 amino acids

Sequence
(BLAST)

1: MGLFSQPKFS VSLSFGSVPE PRSQGFKMPS HKSFMIKKKL AKKMRQNRPI PHWIRLRTDN TIRYNAKRRH WRRTKLGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.