Factsheet for Solyc12g010350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g018810.2.1
Solyc12g008940.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25210.1	Solyc05g018810.2.1	AT4G26110.1	21798944
AT2G25210.1	Solyc12g008940.1.1	AT4G26110.1	21798944
AT2G25210.1	Solyc05g018810.2.1	AT5G56950.1	21798944
AT2G25210.1	Solyc12g008940.1.1	AT5G56950.1	21798944
AT4G31985.1	Solyc05g018810.2.1	AT4G26110.1	21798944
AT4G31985.1	Solyc12g008940.1.1	AT4G26110.1	21798944
AT4G31985.1	Solyc05g018810.2.1	AT5G56950.1	21798944
AT4G31985.1	Solyc12g008940.1.1	AT5G56950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005050.2.1	Tomato	cytosol	60.0	100.0
PGSC0003DMT400003718	Potato	cytosol	58.82	98.04
GSMUA_Achr1P15810_001	Banana	cytosol	38.82	94.29
EES05958	Sorghum	cytosol	56.47	94.12
KRH52367	Soybean	cytosol	56.47	94.12
KRH37867	Soybean	cytosol	56.47	94.12
KRH12895	Soybean	cytosol	56.47	94.12
TraesCS6A01G360400.1	Wheat	cytosol	56.47	94.12
TraesCS6B01G393300.1	Wheat	cytosol	56.47	94.12
TraesCS6D01G343900.1	Wheat	cytosol	56.47	94.12
TraesCS7A01G145700.1	Wheat	cytosol	56.47	94.12
TraesCS7D01G147000.1	Wheat	cytosol	56.47	94.12
Zm00001d018383_P002	Maize	cytosol	56.47	94.12
Os06t0181566-01	Rice	plastid	56.47	94.12
Zm00001d045121_P001	Maize	cytosol	56.47	94.12
KRH61699	Soybean	cytosol	56.47	94.12
Os02t0797200-01	Rice	cytosol	56.47	94.12
Os02t0796900-00	Rice	cytosol	55.29	94.0
AT4G31985.1	Thale cress	cytosol	55.29	92.16
AT2G25210.1	Thale cress	cytosol	47.06	90.91
Bra032033.1-P	Field mustard	cytosol	55.29	90.38
AT3G02190.1	Thale cress	cytosol	52.94	88.24
Bra023970.1-P	Field mustard	cytosol	56.47	87.27
CDY43252	Canola	cytosol	35.29	85.71
KRH52368	Soybean	cytosol	55.29	85.45
Bra039161.1-P	Field mustard	cytosol	50.59	84.31
VIT_11s0149g00220.t01	Wine grape	mitochondrion	56.47	80.0
Bra040064.1-P	Field mustard	cytosol	56.47	73.85
GSMUA_Achr3P13390_001	Banana	cytosol	61.18	71.23
VIT_04s0008g06030.t01	Wine grape	cytosol	54.12	68.66
HORVU0Hr1G017360.1	Barley	mitochondrion	57.65	67.12
CDY62505	Canola	cytosol, plastid	60.0	65.38
VIT_11s0149g00240.t01	Wine grape	cytosol	60.0	65.38
Zm00001d035838_P001	Maize	extracellular	55.29	65.28
GSMUA_Achr7P19310_001	Banana	cytosol	61.18	58.43
Zm00001d052025_P001	Maize	mitochondrion	62.35	54.64
HORVU7Hr1G029860.1	Barley	plastid	60.0	41.46
OQU75968	Sorghum	cytosol	57.65	30.06

Protein Annotations

Gene3D:1.10.1620.10	MapMan:17.1.2.1.42	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023626	UniProt:K4DCC2	HAMAP:MF_00629
PFAM:PD007914	PFAM:PF00832	ScanProsite:PS00051	PANTHER:PTHR19970	PANTHER:PTHR19970:SF13	InterPro:Ribosomal_L39
InterPro:Ribosomal_L39_CS	InterPro:Ribosomal_L39e_dom_sf	SUPFAM:SSF48662	EnsemblPlantsGene:Solyc12g010350.1	EnsemblPlants:Solyc12g010350.1.1	UniParc:UPI0002769E53

Description

No Description!

Coordinates

chr12:+:3407686..3408755

Molecular Weight (calculated)

10534.0 Da

IEP (calculated)

12.120

GRAVY (calculated)

-1.104

Length

85 amino acids

Sequence
(BLAST)

1: MPTLIDFRSS FFWEVTTYIK NTSELKRRES PTAKMPSHKS FMIKKKLAKK QRQNRPIPYW IRMRTDNTIR YNAKRRHWRR TKLGF

Best Arabidopsis Sequence Match ( AT4G31985.1 )
(BLAST)

1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F

Arabidopsis Description

RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.