Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g02330.t01 | |
| VIT_11s0016g02050.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P15810_001 | Banana | cytosol | 52.24 | 100.0 |
| Os02t0796900-00 | Rice | cytosol | 71.64 | 96.0 |
| Os06t0181566-01 | Rice | plastid | 71.64 | 94.12 |
| Zm00001d045121_P001 | Maize | cytosol | 71.64 | 94.12 |
| Os02t0797200-01 | Rice | cytosol | 71.64 | 94.12 |
| Zm00001d018383_P002 | Maize | cytosol | 71.64 | 94.12 |
| KRH61699 | Soybean | cytosol | 71.64 | 94.12 |
| KRH52367 | Soybean | cytosol | 71.64 | 94.12 |
| EES05958 | Sorghum | cytosol | 71.64 | 94.12 |
| KRH37867 | Soybean | cytosol | 71.64 | 94.12 |
| KRH12895 | Soybean | cytosol | 71.64 | 94.12 |
| AT2G25210.1 | Thale cress | cytosol | 61.19 | 93.18 |
| PGSC0003DMT400003718 | Potato | cytosol | 70.15 | 92.16 |
| Bra032033.1-P | Field mustard | cytosol | 70.15 | 90.38 |
| TraesCS6B01G393300.1 | Wheat | cytosol | 68.66 | 90.2 |
| TraesCS6A01G360400.1 | Wheat | cytosol | 68.66 | 90.2 |
| TraesCS6D01G343900.1 | Wheat | cytosol | 68.66 | 90.2 |
| TraesCS7A01G145700.1 | Wheat | cytosol | 68.66 | 90.2 |
| TraesCS7D01G147000.1 | Wheat | cytosol | 68.66 | 90.2 |
| Solyc07g005050.2.1 | Tomato | cytosol | 68.66 | 90.2 |
| AT4G31985.1 | Thale cress | cytosol | 68.66 | 90.2 |
| KRH52368 | Soybean | cytosol | 73.13 | 89.09 |
| CDY43252 | Canola | cytosol | 46.27 | 88.57 |
| Bra039161.1-P | Field mustard | cytosol | 67.16 | 88.24 |
| AT3G02190.1 | Thale cress | cytosol | 64.18 | 84.31 |
| Bra023970.1-P | Field mustard | cytosol | 68.66 | 83.64 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 73.13 | 81.67 |
| Bra040064.1-P | Field mustard | cytosol | 70.15 | 72.31 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 76.12 | 69.86 |
| Zm00001d035838_P001 | Maize | extracellular | 71.64 | 66.67 |
| HORVU0Hr1G017360.1 | Barley | mitochondrion | 68.66 | 63.01 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 71.64 | 61.54 |
| CDY62505 | Canola | cytosol, plastid | 70.15 | 60.26 |
| GSMUA_Achr7P19310_001 | Banana | cytosol | 73.13 | 55.06 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 68.66 | 54.12 |
| Zm00001d052025_P001 | Maize | mitochondrion | 71.64 | 49.48 |
| HORVU7Hr1G029860.1 | Barley | plastid | 68.66 | 37.4 |
| OQU75968 | Sorghum | cytosol | 71.64 | 29.45 |
Protein Annotations
| Gene3D:1.10.1620.10 | MapMan:17.1.2.1.42 | ProteinID:CCB46837 | ProteinID:CCB46837.1 | UniProt:F6H3U8 | EMBL:FN595231 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0022625 | InterPro:IPR023626 | PFAM:PD007914 | PFAM:PF00832 | ScanProsite:PS00051 | PANTHER:PTHR19970 |
| PANTHER:PTHR19970:SF13 | InterPro:Ribosomal_L39 | InterPro:Ribosomal_L39_CS | InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 | TIGR:TC60273 |
| UniParc:UPI0002109232 | ArrayExpress:VIT_04s0008g06030 | EnsemblPlantsGene:VIT_04s0008g06030 | EnsemblPlants:VIT_04s0008g06030.t01 | unigene:Vvi.2557 | RefSeq:XP_002285383 |
| RefSeq:XP_002285383.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:5719643..5720989
Molecular Weight (calculated)
8410.4 Da
IEP (calculated)
12.444
GRAVY (calculated)
-1.218
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MHGQHTTFTN QFYLDFKPSH KTFIIKKKLA KKMRQNRPIP HWIRMRTDNT IRYNAKRRHW RRTKLGF
1: MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG F
Arabidopsis Description
RPL39C60S ribosomal protein L39-1 [Source:UniProtKB/Swiss-Prot;Acc:P51424]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.