Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P15810_001 | Banana | cytosol | 77.27 | 97.14 |
| AT4G31985.1 | Thale cress | cytosol | 100.0 | 86.27 |
| Bra032033.1-P | Field mustard | cytosol | 97.73 | 82.69 |
| AT3G02190.1 | Thale cress | cytosol | 93.18 | 80.39 |
| Os02t0796900-00 | Rice | cytosol | 90.91 | 80.0 |
| Os02t0797200-01 | Rice | cytosol | 90.91 | 78.43 |
| Zm00001d045121_P001 | Maize | cytosol | 90.91 | 78.43 |
| Zm00001d018383_P002 | Maize | cytosol | 90.91 | 78.43 |
| Solyc07g005050.2.1 | Tomato | cytosol | 90.91 | 78.43 |
| Os06t0181566-01 | Rice | plastid | 90.91 | 78.43 |
| KRH61699 | Soybean | cytosol | 90.91 | 78.43 |
| KRH52367 | Soybean | cytosol | 90.91 | 78.43 |
| KRH37867 | Soybean | cytosol | 90.91 | 78.43 |
| KRH12895 | Soybean | cytosol | 90.91 | 78.43 |
| EES05958 | Sorghum | cytosol | 90.91 | 78.43 |
| TraesCS7D01G147000.1 | Wheat | cytosol | 86.36 | 74.51 |
| TraesCS7A01G145700.1 | Wheat | cytosol | 86.36 | 74.51 |
| TraesCS6D01G343900.1 | Wheat | cytosol | 86.36 | 74.51 |
| TraesCS6B01G393300.1 | Wheat | cytosol | 86.36 | 74.51 |
| TraesCS6A01G360400.1 | Wheat | cytosol | 86.36 | 74.51 |
| KRH52368 | Soybean | cytosol | 90.91 | 72.73 |
| VIT_11s0149g00220.t01 | Wine grape | mitochondrion | 95.45 | 70.0 |
| VIT_04s0008g06030.t01 | Wine grape | cytosol | 93.18 | 61.19 |
| GSMUA_Achr3P13390_001 | Banana | cytosol | 93.18 | 56.16 |
| Zm00001d035838_P001 | Maize | extracellular | 90.91 | 55.56 |
| CDY62505 | Canola | cytosol, plastid | 97.73 | 55.13 |
| VIT_11s0149g00240.t01 | Wine grape | cytosol | 93.18 | 52.56 |
| HORVU0Hr1G017360.1 | Barley | mitochondrion | 86.36 | 52.05 |
| Solyc12g010350.1.1 | Tomato | nucleus, unclear | 90.91 | 47.06 |
| PGSC0003DMT400030914 | Potato | cytosol, golgi, mitochondrion, vacuole | 61.36 | 46.55 |
| GSMUA_Achr7P19310_001 | Banana | cytosol | 93.18 | 46.07 |
| Zm00001d052025_P001 | Maize | mitochondrion | 90.91 | 41.24 |
| HORVU7Hr1G029860.1 | Barley | plastid | 86.36 | 30.89 |
| OQU75968 | Sorghum | cytosol | 90.91 | 24.54 |
Protein Annotations
| Gene3D:1.10.1620.10 | MapMan:17.1.2.1.42 | ArrayExpress:AT2G25210 | EnsemblPlantsGene:AT2G25210 | RefSeq:AT2G25210 | TAIR:AT2G25210 |
| RefSeq:AT2G25210-TAIR-G | EnsemblPlants:AT2G25210.1 | TAIR:AT2G25210.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023626 |
| PFAM:PD007914 | PFAM:PF00832 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00051 | PANTHER:PTHR19970 | PANTHER:PTHR19970:SF13 |
| InterPro:Ribosomal_L39 | InterPro:Ribosomal_L39_CS | InterPro:Ribosomal_L39e_dom_sf | SUPFAM:SSF48662 | UniParc:UPI00000AB183 | : |
Description
Ribosomal protein L39 family protein [Source:TAIR;Acc:AT2G25210]
Coordinates
chr2:+:10739855..10740552
Molecular Weight (calculated)
5601.1 Da
IEP (calculated)
12.816
GRAVY (calculated)
-1.434
Length
44 amino acids
Sequence
(BLAST)
(BLAST)
1: MIKKKLGKKM RQNRPIPHWI RLRTDNTIRY NAKRRHWRRT KLGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.