Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013951.1-P | Field mustard | nucleus | 99.45 | 99.45 |
| CDX94372 | Canola | nucleus | 94.26 | 94.01 |
| CDY50005 | Canola | nucleus | 78.69 | 82.05 |
| CDY50468 | Canola | nucleus | 82.24 | 79.63 |
| AT4G26110.1 | Thale cress | nucleus | 80.87 | 79.57 |
| CDY50472 | Canola | nucleus | 80.05 | 78.34 |
| CDY65997 | Canola | nucleus | 17.76 | 76.47 |
| CDY50473 | Canola | nucleus | 37.7 | 73.4 |
| CDY21663 | Canola | nucleus | 67.76 | 71.06 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 72.95 | 70.08 |
| CDX82688 | Canola | nucleus | 71.86 | 69.21 |
| KRH12415 | Soybean | endoplasmic reticulum | 68.58 | 69.15 |
| CDY67089 | Canola | nucleus | 70.77 | 69.07 |
| KRH37411 | Soybean | nucleus | 68.58 | 68.77 |
| PGSC0003DMT400055114 | Potato | nucleus | 69.95 | 68.45 |
| CDY60738 | Canola | nucleus | 71.31 | 68.32 |
| CDY69405 | Canola | nucleus | 69.13 | 68.01 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 71.58 | 67.88 |
| Solyc12g008940.1.1 | Tomato | nucleus | 68.85 | 67.38 |
| Solyc05g018810.2.1 | Tomato | nucleus | 69.13 | 67.29 |
| KRH19202 | Soybean | nucleus | 68.85 | 67.2 |
| KRH02690 | Soybean | nucleus | 68.58 | 66.23 |
| PGSC0003DMT400000751 | Potato | nucleus | 66.12 | 65.41 |
| CDX97517 | Canola | nucleus | 43.17 | 57.25 |
| CDY23642 | Canola | nucleus | 44.26 | 55.1 |
| CDY52429 | Canola | nucleus | 34.15 | 42.23 |
| CDX83813 | Canola | cytosol | 21.86 | 31.62 |
| CDX96698 | Canola | cytosol | 21.58 | 31.23 |
| CDY19242 | Canola | cytosol | 21.04 | 29.73 |
| CDY26724 | Canola | cytosol | 19.4 | 28.06 |
Protein Annotations
| MapMan:12.2.6 | Gene3D:3.30.1120.90 | GO:A0A078DQ63 | EnsemblPlants:CDX89363 | ProteinID:CDX89363 | ProteinID:CDX89363.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | EnsemblPlantsGene:GSBRNA2T00149592001 | InterPro:NAP-like_sf | InterPro:NAP_family |
| PFAM:PF00956 | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF101 | SUPFAM:SSF143113 | UniParc:UPI0004EE65EB | SEG:seg |
Description
BnaA01g15300D
Coordinates
chrLK031858:-:1123616..1126265
Molecular Weight (calculated)
42407.7 Da
IEP (calculated)
4.135
GRAVY (calculated)
-1.154
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNDKDNFNL ADLTDALKDE DRIGLMHALK NKLMAGQHSD VLESLTPQVR NRVEALKEIQ GKYDELEAKF RAERAVLEAK YEMLYQPLYT KRYEIVNGVT
101: EVETTPEDTK MDQEGEKTAE EKGVPSFWLT ALKNNDVTSE EVTERDEEAL KYLKDIKWYK TEEPKGFKLE FFFDSNPYFK NAVLTKSYHM IDEDEPLLEK
201: AIGTEIDWYP GKCLTQKILK KKPKKGSNSK PITKMEDCES FFNFFNPPQV PEEDEDIDED KAEELQNLME QDYDIGSAIR EKIIPHAVSW FTGEAMEGEE
301: FDIDDDDEED EDEDEEDDED EDEDDEDDEE DRKTRKKPSS GHKKGGRSQV VGDGQQGERP PECKQQ
101: EVETTPEDTK MDQEGEKTAE EKGVPSFWLT ALKNNDVTSE EVTERDEEAL KYLKDIKWYK TEEPKGFKLE FFFDSNPYFK NAVLTKSYHM IDEDEPLLEK
201: AIGTEIDWYP GKCLTQKILK KKPKKGSNSK PITKMEDCES FFNFFNPPQV PEEDEDIDED KAEELQNLME QDYDIGSAIR EKIIPHAVSW FTGEAMEGEE
301: FDIDDDDEED EDEDEEDDED EDEDDEDDEE DRKTRKKPSS GHKKGGRSQV VGDGQQGERP PECKQQ
001: MSNDKDSFNV SDLTAALKDE DRAGLVNALK NKLQNLAGQR SDVLENLTPN VRKRVDALRD IQSQHDELEA KFREERAILE AKYQTLYQPL YVKRYEIVNG
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
101: TTEVELAPED DTKVDQGEEK TAEEKGVPSF WLTALKNNDV ISEEVTERDE GALKYLKDIK WCKIEEPKGF KLEFFFDTNP YFKNTVLTKS YHMIDEDEPL
201: LEKAMGTEID WYPGKCLTQK ILKKKPKKGS KNTKPITKLE DCESFFNFFS PPEVPDEDED IDEERAEDLQ NLMEQDYDIG STIREKIIPR AVSWFTGEAM
301: EAEDFEIDDD EEDDIDEDED EEDEEDEEDD DDEDEEESKT KKKPSIGNKK GGRSQIVGEG KQDERPPECK QQ
Arabidopsis Description
NAP1;1Nucleosome assembly protein 1;1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.