Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
nucleus: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH12415 | Soybean | endoplasmic reticulum | 92.05 | 92.56 |
| Solyc12g008940.1.1 | Tomato | nucleus | 78.08 | 76.2 |
| KRH19202 | Soybean | nucleus | 76.99 | 74.93 |
| PGSC0003DMT400055114 | Potato | nucleus | 76.44 | 74.6 |
| KRH02690 | Soybean | nucleus | 76.99 | 74.14 |
| VIT_09s0002g02330.t01 | Wine grape | nucleus | 77.26 | 74.02 |
| PGSC0003DMT400000751 | Potato | nucleus | 74.79 | 73.78 |
| VIT_11s0016g02050.t01 | Wine grape | nucleus | 77.53 | 73.32 |
| Solyc05g018810.2.1 | Tomato | nucleus | 75.07 | 72.87 |
| CDY50468 | Canola | nucleus | 75.07 | 72.49 |
| CDY50472 | Canola | nucleus | 73.42 | 71.66 |
| AT5G56950.1 | Thale cress | nucleus | 73.15 | 71.39 |
| AT4G26110.1 | Thale cress | nucleus | 71.23 | 69.89 |
| KRH23302 | Soybean | nucleus | 63.29 | 69.37 |
| CDX89363 | Canola | nucleus | 68.77 | 68.58 |
| Bra013951.1-P | Field mustard | nucleus | 68.49 | 68.31 |
| CDX94372 | Canola | nucleus | 68.22 | 67.85 |
| CDY50005 | Canola | nucleus | 64.66 | 67.24 |
| KRH10020 | Soybean | nucleus | 67.4 | 67.21 |
| CDY50473 | Canola | nucleus | 33.7 | 65.43 |
| CDY65997 | Canola | nucleus | 14.25 | 61.18 |
| Bra002778.1-P | Field mustard | nucleus | 67.12 | 59.04 |
| CDY52429 | Canola | nucleus | 30.14 | 37.16 |
| KRH65521 | Soybean | cytosol | 9.04 | 33.0 |
| KRH65520 | Soybean | nucleus | 9.32 | 30.91 |
| KRH63352 | Soybean | nucleus | 21.37 | 29.77 |
| KRH54545 | Soybean | nucleus | 21.1 | 29.17 |
| KRH75776 | Soybean | cytosol | 7.4 | 28.42 |
| KRH03467 | Soybean | nucleus | 20.0 | 28.29 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 6.58 | 27.59 |
| KRH56918 | Soybean | nucleus | 19.18 | 27.34 |
| KRH49525 | Soybean | cytosol | 9.86 | 21.95 |
| HORVU1Hr1G018340.1 | Barley | cytosol | 1.64 | 20.69 |
Protein Annotations
| EntrezGene:100783783 | MapMan:12.2.6 | Gene3D:3.30.1120.90 | EMBL:ACUP02005446 | EnsemblPlantsGene:GLYMA_09G064400 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | UniProt:I1L1J3 | EnsemblPlants:KRH37411 | ProteinID:KRH37411 | ProteinID:KRH37411.1 | InterPro:NAP-like_sf |
| InterPro:NAP_family | PFAM:PF00956 | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF101 | SUPFAM:SSF143113 | UniParc:UPI00023CAC56 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:6244319..6247900
Molecular Weight (calculated)
41573.5 Da
IEP (calculated)
4.120
GRAVY (calculated)
-1.039
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNNNDNIAV TDLTSALNEE NRADLVNALK SKIQSLAGAH SDVLETLSPN VRKRVESLRE IQGKHDEIEA DFLKEKEALE AKYQKLYQPL YTKRYEIVNG
101: VIEVEGAANE TTDESEEDKG KKGVPSFWLN AMKNNDVLAE EISERDEGAL KFLKDIKWSR IENPKGFKLE FFFDTNPYFS NTILTKTYHM IDEDEPILEK
201: AIGTEIEWYP GKCLTQKVLK KKPKKGSKNA KPITKTESCE SFFNFFKPPE VPEDDVDIDE DLAEELQNQM EQDYDIGSTI RDKIIPHAVS WFTGEAVEGD
301: EFEDLEDDED GDDDEDDEEE DEDEDDDDGD EEEEDSKTKK KSSAVKKSGR AQAGDGERPP ECKQQ
101: VIEVEGAANE TTDESEEDKG KKGVPSFWLN AMKNNDVLAE EISERDEGAL KFLKDIKWSR IENPKGFKLE FFFDTNPYFS NTILTKTYHM IDEDEPILEK
201: AIGTEIEWYP GKCLTQKVLK KKPKKGSKNA KPITKTESCE SFFNFFKPPE VPEDDVDIDE DLAEELQNQM EQDYDIGSTI RDKIIPHAVS WFTGEAVEGD
301: EFEDLEDDED GDDDEDDEEE DEDEDDDDGD EEEEDSKTKK KSSAVKKSGR AQAGDGERPP ECKQQ
001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ
Arabidopsis Description
NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.