CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12155
KRH37161

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	KRH12155	AT1G30860.1	21798944
AT2G47610.1	KRH37161	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31699	Soybean	cytosol, nucleus	99.23	99.23
KRH24214	Soybean	nucleus	93.08	93.44
KRH29218	Soybean	endoplasmic reticulum, nucleus	93.08	93.44
Os01t0924800-00	Rice	cytosol, golgi	54.23	89.24
Os09t0507800-01	Rice	nucleus, plasma membrane	88.08	88.76
Os08t0326400-01	Rice	cytosol	88.08	88.76
Zm00001d006100_P001	Maize	plasma membrane	87.69	88.37
EER99158	Sorghum	cytosol	87.31	87.98
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	87.31	87.98
Zm00001d031640_P001	Maize	mitochondrion	86.92	87.94
TraesCS7D01G262800.2	Wheat	cytosol	86.54	87.21
TraesCS7A01G261600.1	Wheat	cytosol, plastid	86.54	87.21
TraesCS7B01G159700.1	Wheat	cytosol	86.15	86.82
GSMUA_Achr10P...	Banana	cytosol	88.46	86.14
TraesCS5D01G296200.1	Wheat	cytosol	85.77	86.1
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	85.77	86.1
TraesCS5B01G287900.1	Wheat	cytosol	85.77	86.1
Bra004442.1-P	Field mustard	cytosol	84.23	85.55
Bra014387.1-P	Field mustard	cytosol	83.85	85.16
AT2G47610.1	Thale cress	cytosol	83.85	84.82
AT3G62870.1	Thale cress	cytosol	83.46	84.77
CDX93955	Canola	cytosol	84.23	83.27
CDY55535	Canola	extracellular	30.38	83.16
HORVU7Hr1G054670.5	Barley	cytosol	86.15	82.96
CDX89154	Canola	cytosol	84.23	81.72
GSMUA_Achr11P...	Banana	cytosol	86.54	81.23
PGSC0003DMT400008912	Potato	cytosol, plastid	79.23	80.78
CDY66035	Canola	cytosol	80.77	80.77
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	79.62	80.23
Solyc01g097760.2.1	Tomato	nucleus	79.62	80.23
PGSC0003DMT400057989	Potato	cytosol	79.62	80.23
CDX80121	Canola	cytosol	80.77	79.85
Solyc06g064470.2.1	Tomato	nucleus	79.23	79.84
Solyc06g050120.2.1	Tomato	nucleus	79.23	79.54
KRH15988	Soybean	cytosol	23.85	79.49
Bra000455.1-P	Field mustard	cytosol	83.08	79.41
CDX83325	Canola	cytosol	83.08	79.41
HORVU5Hr1G076700.2	Barley	cytosol	86.15	78.87
GSMUA_Achr3P03600_001	Banana	cytosol	86.15	78.05
CDX76668	Canola	extracellular	84.62	78.01
CDX95727	Canola	cytosol	82.69	77.06
VIT_14s0068g01640.t01	Wine grape	mitochondrion	88.46	76.67
PGSC0003DMT400083237	Potato	cytosol	71.15	74.3
CDY11453	Canola	cytosol	85.0	74.16
PGSC0003DMT400015879	Potato	cytosol	41.92	74.15
Solyc10g018810.1.1	Tomato	cytosol	21.15	71.43
KXG35979	Sorghum	cytosol, mitochondrion	87.31	68.58
EES03046	Sorghum	cytosol	16.92	64.71
GSMUA_Achr6P21550_001	Banana	cytosol	86.15	64.55
CDX92144	Canola	extracellular	79.23	63.58
KXG25835	Sorghum	cytosol	16.54	63.24
Solyc01g020290.1.1	Tomato	cytosol	13.08	62.96
CDY03061	Canola	extracellular	25.38	61.68
GSMUA_Achr6P14640_001	Banana	cytosol	88.08	60.26
Solyc11g042870.1.1	Tomato	cytosol	19.62	57.95
CDY25121	Canola	cytosol	81.92	55.04
Bra013849.1-P	Field mustard	cytosol	84.62	54.46
CDY34328	Canola	nucleus	83.85	53.96
CDY03403	Canola	cytosol	83.08	52.81
CDY08962	Canola	endoplasmic reticulum, extracellular	20.77	50.47
Bra003512.1-P	Field mustard	cytosol	77.31	49.63
CDX92662	Canola	cytosol	78.46	49.28
Bra019201.1-P	Field mustard	cytosol	79.62	49.17
CDY11043	Canola	cytosol	79.62	49.17
CDX67906	Canola	extracellular	80.77	47.4
CDY33717	Canola	cytosol	31.92	41.71
TraesCS4D01G148500.2	Wheat	cytosol	19.23	34.01
CDX93958	Canola	cytosol	9.23	23.08
CDY55536	Canola	cytosol	9.23	23.08
CDX89151	Canola	cytosol	9.23	22.86
CDY25120	Canola	cytosol	6.15	12.8

Protein Annotations

EntrezGene:100819609	MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	UniProt:A0A0R0KWB3	EMBL:ACUP02000687	EnsemblPlantsGene:GLYMA_02G002800
GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904
InterPro:IPR029064	InterPro:IPR038524	EnsemblPlants:KRH69083	ProteinID:KRH69083	ProteinID:KRH69083.1	InterPro:L30e-like
PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70
InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315
UniParc:UPI0001BA8906	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:324585..327438

Molecular Weight (calculated)

29579.9 Da

IEP (calculated)

10.914

GRAVY (calculated)

-0.567

Length

260 amino acids

Sequence
(BLAST)

001: MAPKKGAKGG VVAAKKKVQE KVTNPLFEKR PKQFGIGGAL PPKRDLTRFV KWPKNVQIQR KKRILKQRLK VPPALNQFTK TLDKNLATNL FKMLLKYRPE
101: DKAEKKERLL KRAQAEADGK PVEAKKPIVV KYGLNHVTYL IEQNKAQLVV IAHDVDPIEL VVWLPALCRK MEIPYCIVKG KARLGTIVHK KTASVLCLTT
201: VKNEDKMEFS RILEAIKANF NDKYDEYRKK WGGGIMGSKS QAKTRAKEKL LAKEAAQRMN

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.