CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	EER99396	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99158	Sorghum	cytosol	77.95	100.0
Zm00001d006100_P001	Maize	plasma membrane	76.74	98.45
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	76.44	98.06
Os09t0507800-01	Rice	nucleus, plasma membrane	76.13	97.67
Os08t0326400-01	Rice	cytosol	76.13	97.67
TraesCS5D01G296200.1	Wheat	cytosol	74.62	95.37
TraesCS5B01G287900.1	Wheat	cytosol	74.62	95.37
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	74.62	95.37
GSMUA_Achr10P...	Banana	cytosol	72.81	90.26
HORVU5Hr1G076700.2	Barley	cytosol	76.74	89.44
KRH29218	Soybean	endoplasmic reticulum, nucleus	69.79	89.19
KRH24214	Soybean	nucleus	69.49	88.8
GSMUA_Achr11P...	Banana	cytosol	73.72	88.09
KRH69083	Soybean	nucleus	68.58	87.31
KRH31699	Soybean	cytosol, nucleus	68.58	87.31
AT2G47610.1	Thale cress	cytosol	65.56	84.44
Bra004442.1-P	Field mustard	cytosol	65.26	84.38
Bra014387.1-P	Field mustard	cytosol	65.26	84.38
GSMUA_Achr3P03600_001	Banana	cytosol	73.11	84.32
AT3G62870.1	Thale cress	cytosol	64.95	83.98
CDX93955	Canola	cytosol	64.65	81.37
CDX89154	Canola	cytosol	65.56	80.97
KRH15988	Soybean	cytosol	18.73	79.49
PGSC0003DMT400008912	Potato	cytosol, plastid	61.03	79.22
Bra000455.1-P	Field mustard	cytosol	64.95	79.04
CDX83325	Canola	cytosol	64.95	79.04
CDY55535	Canola	extracellular	22.66	78.95
Solyc01g097760.2.1	Tomato	nucleus	61.33	78.68
PGSC0003DMT400057989	Potato	cytosol	61.33	78.68
VIT_14s0068g01640.t01	Wine grape	mitochondrion	71.3	78.67
CDY66035	Canola	cytosol	61.63	78.46
Solyc06g064470.2.1	Tomato	nucleus	61.03	78.29
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	61.03	78.29
VIT_14s0083g00970.t01	Wine grape	plastid	70.69	77.74
Solyc06g050120.2.1	Tomato	nucleus	60.73	77.61
CDX80121	Canola	cytosol	61.63	77.57
VIT_17s0000g00980.t01	Wine grape	cytosol	70.09	77.33
CDX76668	Canola	extracellular	65.86	77.31
CDX95727	Canola	cytosol	64.95	77.06
PGSC0003DMT400083237	Potato	cytosol	55.29	73.49
CDY11453	Canola	cytosol	66.16	73.49
PGSC0003DMT400015879	Potato	cytosol	32.33	72.79
Solyc10g018810.1.1	Tomato	cytosol	16.92	72.73
EES03046	Sorghum	cytosol	14.8	72.06
GSMUA_Achr6P21550_001	Banana	cytosol	74.62	71.18
KXG25835	Sorghum	cytosol	14.5	70.59
GSMUA_Achr6P14640_001	Banana	cytosol	75.53	65.79
CDX92144	Canola	extracellular	62.24	63.58
CDY03061	Canola	extracellular	19.34	59.81
Solyc01g020290.1.1	Tomato	cytosol	9.37	57.41
Solyc11g042870.1.1	Tomato	cytosol	15.11	56.82
CDY25121	Canola	cytosol	65.86	56.33
CDY34328	Canola	nucleus	66.16	54.21
CDY03403	Canola	cytosol	66.77	54.03
Bra013849.1-P	Field mustard	cytosol	65.86	53.96
CDY08962	Canola	endoplasmic reticulum, extracellular	16.01	49.53
Bra003512.1-P	Field mustard	cytosol	59.82	48.89
Bra019201.1-P	Field mustard	cytosol	61.93	48.69
CDY11043	Canola	cytosol	61.93	48.69
CDX67906	Canola	extracellular	64.95	48.53
CDX92662	Canola	cytosol	60.42	48.31
CDY33717	Canola	cytosol	25.08	41.71
TraesCS4D01G148500.2	Wheat	cytosol	17.52	39.46
CDX93958	Canola	cytosol	7.85	25.0
CDY55536	Canola	cytosol	7.85	25.0
CDX89151	Canola	cytosol	7.85	24.76
CDY25120	Canola	cytosol	5.74	15.2

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	EntrezGene:8054789	EntrezGene:8054791	UniProt:A0A1B6QDI2	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904
InterPro:IPR029064	InterPro:IPR038524	EnsemblPlants:KXG35979	ProteinID:KXG35979	ProteinID:KXG35979.1	InterPro:L30e-like
PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70
InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	EnsemblPlantsGene:SORBI_3002G258800
SUPFAM:SSF55315	unigene:Sbi.20327	unigene:Sbi.3504	UniParc:UPI00081AEA88	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:64435985..64438321

Molecular Weight (calculated)

37242.3 Da

IEP (calculated)

11.148

GRAVY (calculated)

-0.505

Length

331 amino acids

Sequence
(BLAST)

001: MEAHLPFSRV RPKWLRLNPN PSTGRPRPGC LLVHLASDGQ EPPLRLQAPL AASSPYLAPP SSPVRNAKLP SGEMAPKRGG RAPVPAKKKT DKVVNPLFEK
101: RPKQFGIGGA LPPKKDLHRF VKWPKVVRIQ RQRRILKQRL KVPPALNQFT RTLDKNLATN LFKMLLKYRP EDKAAKKERL LKRAQAETEG KTVEAKKPIV
201: VKYGLNHVTY LIEQNKAQLV VIAHDVDPIE LVVWLPALCR KMEVPYCIVK GKARLGSIVH KKTASVLCLT TVKNEDKLEF SKILEAIKAN FNDKFDEVRK
301: KWGGGIMGSK SQAKTKAREK LIAKEAAQRM T

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.