Factsheet for Solyc06g064460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc10g005220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT2G47610.1	Solyc10g005220.2.1	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g064470.2.1	Tomato	nucleus	98.45	98.45
Solyc01g097760.2.1	Tomato	nucleus	96.9	96.9
Solyc06g050120.2.1	Tomato	nucleus	96.9	96.53
PGSC0003DMT400008912	Potato	cytosol, plastid	95.35	96.47
Solyc10g018810.1.1	Tomato	cytosol	27.13	90.91
Solyc01g020290.1.1	Tomato	cytosol	17.05	81.48
KRH31699	Soybean	cytosol, nucleus	80.62	80.0
KRH69083	Soybean	nucleus	80.23	79.62
KRH24214	Soybean	nucleus	79.84	79.54
AT2G47610.1	Thale cress	cytosol	79.07	79.38
KRH29218	Soybean	endoplasmic reticulum, nucleus	79.46	79.15
Zm00001d006100_P001	Maize	plasma membrane	78.68	78.68
Zm00001d031640_P001	Maize	mitochondrion	78.29	78.6
AT3G62870.1	Thale cress	cytosol	77.91	78.52
Bra004442.1-P	Field mustard	cytosol	77.91	78.52
Bra014387.1-P	Field mustard	cytosol	77.91	78.52
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	78.29	78.29
EER99158	Sorghum	cytosol	78.29	78.29
Os09t0507800-01	Rice	nucleus, plasma membrane	78.29	78.29
Os08t0326400-01	Rice	cytosol	78.29	78.29
TraesCS7A01G261600.1	Wheat	cytosol, plastid	77.91	77.91
TraesCS7D01G262800.2	Wheat	cytosol	77.52	77.52
TraesCS5D01G296200.1	Wheat	cytosol	77.52	77.22
TraesCS5B01G287900.1	Wheat	cytosol	77.52	77.22
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	77.52	77.22
Os01t0924800-00	Rice	cytosol, golgi	47.29	77.22
TraesCS7B01G159700.1	Wheat	cytosol	77.13	77.13
GSMUA_Achr10P...	Banana	cytosol	78.29	75.66
Bra000455.1-P	Field mustard	cytosol	79.46	75.37
HORVU7Hr1G054670.5	Barley	cytosol	77.13	73.7
GSMUA_Achr11P...	Banana	cytosol	77.52	72.2
HORVU5Hr1G076700.2	Barley	cytosol	77.91	70.77
Solyc11g042870.1.1	Tomato	cytosol	23.64	69.32
GSMUA_Achr3P03600_001	Banana	cytosol	75.19	67.6
VIT_14s0083g00970.t01	Wine grape	plastid	78.29	67.11
KRH15988	Soybean	cytosol	18.99	62.82
KXG35979	Sorghum	cytosol, mitochondrion	78.29	61.03
EES03046	Sorghum	cytosol	15.5	58.82
KXG25835	Sorghum	cytosol	15.12	57.35
GSMUA_Achr6P21550_001	Banana	cytosol	76.36	56.77
GSMUA_Achr6P14640_001	Banana	cytosol	77.91	52.89
Bra019201.1-P	Field mustard	cytosol	83.72	51.31
Bra013849.1-P	Field mustard	cytosol	79.07	50.49
Bra003512.1-P	Field mustard	cytosol	69.77	44.44
TraesCS4D01G148500.2	Wheat	cytosol	17.44	30.61
CDY55536	Canola	cytosol	8.91	22.12
CDX93958	Canola	cytosol	8.91	22.12
CDX89151	Canola	cytosol	8.91	21.9
CDY25120	Canola	cytosol	5.43	11.2

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904
InterPro:IPR029064	InterPro:IPR038524	UniProt:K4C778	InterPro:L30e-like	PFAM:PF01248	PRINTS:PR00881
PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf
InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	EnsemblPlantsGene:Solyc06g064460.2	EnsemblPlants:Solyc06g064460.2.1
UniParc:UPI0002766EF0	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:40142583..40145105

Molecular Weight (calculated)

29312.6 Da

IEP (calculated)

11.041

GRAVY (calculated)

-0.577

Length

258 amino acids

Sequence
(BLAST)

001: MAPKKGVAVS AKKKPEKAKV LNPLFEKRPK QFGIGGALPP KKDVTRNVRW PRNVTLQRKK RILKMRLKVP PALNQFTKTL DKNLATNLFK MLLKYRPEDK
101: AAKKERLVKR AQAEAEGKTP ETKKPIIVKY GLKHITYLIE QNKAQLVVIA HDVDPIELVV WLPALCRKME IPYCIVKGKA RLGSIVHKKT ASALCLTTVK
201: NEDKMEFSRV LEAIKANFND KYEENRKKWG GGIMGSKSQA RTKAKERVLA KEAAQRLN

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.