Factsheet for Solyc06g050120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc10g005220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT2G47610.1	Solyc10g005220.2.1	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g064470.2.1	Tomato	nucleus	96.91	97.29
Solyc06g064460.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	96.53	96.9
Solyc01g097760.2.1	Tomato	nucleus	95.37	95.74
PGSC0003DMT400015879	Potato	cytosol	51.74	91.16
Solyc10g018810.1.1	Tomato	cytosol	27.03	90.91
Solyc01g020290.1.1	Tomato	cytosol	16.99	81.48
AT2G47610.1	Thale cress	cytosol	79.15	79.77
KRH31699	Soybean	cytosol, nucleus	79.92	79.62
KRH24214	Soybean	nucleus	79.54	79.54
KRH69083	Soybean	nucleus	79.54	79.23
KRH29218	Soybean	endoplasmic reticulum, nucleus	79.15	79.15
AT3G62870.1	Thale cress	cytosol	77.61	78.52
Bra004442.1-P	Field mustard	cytosol	77.61	78.52
Bra014387.1-P	Field mustard	cytosol	77.22	78.12
EER99158	Sorghum	cytosol	77.61	77.91
Zm00001d006100_P001	Maize	plasma membrane	77.61	77.91
Os09t0507800-01	Rice	nucleus, plasma membrane	77.61	77.91
Os08t0326400-01	Rice	cytosol	77.61	77.91
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	77.22	77.52
Zm00001d031640_P001	Maize	mitochondrion	76.83	77.43
TraesCS5D01G296200.1	Wheat	cytosol	77.22	77.22
TraesCS5B01G287900.1	Wheat	cytosol	77.22	77.22
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	77.22	77.22
TraesCS7D01G262800.2	Wheat	cytosol	76.83	77.13
TraesCS7A01G261600.1	Wheat	cytosol, plastid	76.83	77.13
TraesCS7B01G159700.1	Wheat	cytosol	76.45	76.74
Os01t0924800-00	Rice	cytosol, golgi	46.72	76.58
GSMUA_Achr10P...	Banana	cytosol	77.99	75.66
Bra000455.1-P	Field mustard	cytosol	78.76	75.0
HORVU7Hr1G054670.5	Barley	cytosol	76.45	73.33
GSMUA_Achr11P...	Banana	cytosol	77.22	72.2
HORVU5Hr1G076700.2	Barley	cytosol	77.61	70.77
Solyc11g042870.1.1	Tomato	cytosol	23.17	68.18
GSMUA_Achr3P03600_001	Banana	cytosol	74.9	67.6
VIT_14s0083g00970.t01	Wine grape	plastid	77.99	67.11
KRH15988	Soybean	cytosol	19.3	64.1
KXG35979	Sorghum	cytosol, mitochondrion	77.61	60.73
EES03046	Sorghum	cytosol	15.44	58.82
KXG25835	Sorghum	cytosol	15.06	57.35
GSMUA_Achr6P21550_001	Banana	cytosol	76.06	56.77
GSMUA_Achr6P14640_001	Banana	cytosol	77.61	52.89
Bra019201.1-P	Field mustard	cytosol	83.01	51.07
Bra013849.1-P	Field mustard	cytosol	78.38	50.25
Bra003512.1-P	Field mustard	cytosol	69.11	44.2
TraesCS4D01G148500.2	Wheat	cytosol	16.99	29.93
CDX93958	Canola	cytosol	9.27	23.08
CDY55536	Canola	cytosol	9.27	23.08
CDX89151	Canola	cytosol	9.27	22.86
CDY25120	Canola	cytosol	5.79	12.0

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:GO:0000470	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	GO:GO:0042254	GO:GO:1990904
InterPro:IPR029064	InterPro:IPR038524	UniProt:K4C5F9	InterPro:L30e-like	PFAM:PF01248	PRINTS:PR00881
PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf
InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	EnsemblPlantsGene:Solyc06g050120.2	EnsemblPlants:Solyc06g050120.2.1
UniParc:UPI000276692B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:32482061..32484238

Molecular Weight (calculated)

29401.7 Da

IEP (calculated)

11.041

GRAVY (calculated)

-0.554

Length

259 amino acids

Sequence
(BLAST)

001: MAPKKGVAVA AKKKAEKTSK VVNPLFEKRP KQFGIGGALP PKKDVTRNVR WPRNVTLQRK KRILKMRLKV PPALNQFTKT LDKNLATNLF KMLLKYRPED
101: KAAKKERLVK RVQAEAEGKT PETKKPIIVK YGLKHITYLI EQNKAQLVVI AHDVDPIELV VWLPALCRKM EIPYCIVKGK ARLGSIVHKK TASALCLTTV
201: KNEDKMEFSR VLEAIKANFN DKYEENRKKW GGGIMGSKSQ ARTKAKERVL AKEAAQRLN

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.