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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 18260611
plasma membrane: 19502382
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0107500-00
Os07t0499800-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G47610.1 Os03t0107500-00 AT1G30860.1 21798944
AT2G47610.1 Os07t0499800-01 AT1G30860.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os08t0326400-01 Rice cytosol 100.0 100.0
Zm00001d006100_P001 Maize plasma membrane 98.06 98.06
Zm00001d021061_P001 Maize cytosol, mitochondrion, plasma membrane 97.67 97.67
EER99158 Sorghum cytosol 97.67 97.67
TraesCS5D01G296200.1 Wheat cytosol 95.74 95.37
TraesCS5B01G287900.1 Wheat cytosol 95.74 95.37
TraesCS5A01G288400.1 Wheat cytosol, golgi, nucleus, plastid, unclear 95.74 95.37
Os01t0924800-00 Rice cytosol, golgi 58.14 94.94
KRH29218 Soybean endoplasmic reticulum, nucleus 90.31 89.96
GSMUA_Achr10P... Banana cytosol 93.02 89.89
KRH24214 Soybean nucleus 89.53 89.19
KRH69083 Soybean nucleus 88.76 88.08
KRH31699 Soybean cytosol, nucleus 88.76 88.08
GSMUA_Achr11P... Banana cytosol 93.8 87.36
HORVU5Hr1G076700.2 Barley cytosol 96.12 87.32
Bra004442.1-P Field mustard cytosol 84.5 85.16
Bra014387.1-P Field mustard cytosol 83.72 84.38
AT2G47610.1 Thale cress cytosol 83.72 84.05
AT3G62870.1 Thale cress cytosol 83.33 83.98
GSMUA_Achr3P03600_001 Banana cytosol 93.41 83.97
CDX93955 Canola cytosol 83.72 82.13
KRH15988 Soybean cytosol 24.42 80.77
CDX89154 Canola cytosol 83.72 80.6
CDY66035 Canola cytosol 79.84 79.23
CDY55535 Canola extracellular 29.07 78.95
PGSC0003DMT400008912 Potato cytosol, plastid 77.91 78.82
Bra000455.1-P Field mustard cytosol 82.95 78.68
CDX83325 Canola cytosol 82.95 78.68
CDX80121 Canola cytosol 79.84 78.33
Solyc01g097760.2.1 Tomato nucleus 78.29 78.29
PGSC0003DMT400057989 Potato cytosol 78.29 78.29
Solyc06g064460.2.1 Tomato cytosol, endoplasmic reticulum, nucleus 78.29 78.29
Solyc06g064470.2.1 Tomato nucleus 77.91 77.91
Solyc06g050120.2.1 Tomato nucleus 77.91 77.61
VIT_17s0000g00980.t01 Wine grape cytosol 89.53 77.0
VIT_14s0068g01640.t01 Wine grape mitochondrion 89.15 76.67
CDX76668 Canola extracellular 83.72 76.6
CDX95727 Canola cytosol 82.56 76.34
KXG35979 Sorghum cytosol, mitochondrion 97.67 76.13
VIT_14s0083g00970.t01 Wine grape plastid 88.76 76.08
PGSC0003DMT400083237 Potato cytosol 70.93 73.49
CDY11453 Canola cytosol 84.11 72.82
PGSC0003DMT400015879 Potato cytosol 41.47 72.79
Solyc10g018810.1.1 Tomato cytosol 21.32 71.43
GSMUA_Achr6P21550_001 Banana cytosol 93.41 69.45
GSMUA_Achr6P14640_001 Banana cytosol 94.19 63.95
CDX92144 Canola extracellular 78.68 62.65
CDY03061 Canola extracellular 24.81 59.81
Solyc01g020290.1.1 Tomato cytosol 12.02 57.41
Solyc11g042870.1.1 Tomato cytosol 19.38 56.82
CDY25121 Canola cytosol 82.17 54.78
Bra013849.1-P Field mustard cytosol 84.5 53.96
CDY34328 Canola nucleus 84.5 53.96
CDY03403 Canola cytosol 83.72 52.81
CDY08962 Canola endoplasmic reticulum, extracellular 20.54 49.53
Bra003512.1-P Field mustard cytosol 77.13 49.14
CDX92662 Canola cytosol 77.52 48.31
Bra019201.1-P Field mustard cytosol 78.68 48.22
CDY11043 Canola cytosol 78.68 48.22
CDX67906 Canola extracellular 81.01 47.18
CDY33717 Canola cytosol 32.95 42.71
TraesCS4D01G148500.2 Wheat cytosol 21.32 37.41
CDY55536 Canola cytosol 10.47 25.96
CDX93958 Canola cytosol 10.47 25.96
CDX89151 Canola cytosol 10.47 25.71
CDY25120 Canola cytosol 6.98 14.4
Protein Annotations
MapMan:17.1.2.1.6Gene3D:3.30.1330.210EntrezGene:4345279EntrezGene:4347522EMBL:AK061725EMBL:AK062210
EMBL:AK121204ProteinID:BAD01672.1ProteinID:BAD03264.1ProteinID:BAF23464.1ProteinID:BAF25532.1ProteinID:BAT04904.1
ProteinID:BAT08880.1ncoils:CoilEMBL:D12631ProteinID:EAZ45310.1GO:GO:0000470GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022625GO:GO:0042254
GO:GO:1990904InterPro:IPR029064InterPro:IPR038524InterPro:L30e-likeEnsemblPlantsGene:Os09g0507800EnsemblPlants:Os09t0507800-01
UniProt:P0DKK7UniProt:P35685PFAM:PF01248PRINTS:PR00881PRINTS:PR00882ScanProsite:PS01082
PANTHER:PTHR23105PANTHER:PTHR23105:SF70InterPro:Ribosomal_L7A/L8InterPro:Ribosomal_L7A/L8_sfInterPro:Ribosomal_L7Ae/L30e/S12e/Gad45InterPro:Ribosomal_L7Ae/L8/Nhp2
InterPro:Ribosomal_L7Ae_CSSUPFAM:SSF55315UniParc:UPI0000134182RefSeq:XP_015611976.1RefSeq:XP_015650875.1SEG:seg
Description
Ribosomal protein L7a, Ribosomal protein L7a.e, Transcription factor surf-360S ribosomal protein L7a. (Os09t0507800-01)
Coordinates
chr9:-:19683683..19685872
Molecular Weight (calculated)
29305.6 Da
IEP (calculated)
11.088
GRAVY (calculated)
-0.510
Length
258 amino acids
Sequence
(BLAST)
001: MAPKRGGRAP VPAKKKTEKV TNPLFEKRPK QFGIGGALPP KKDLHRFVKW PKVVRIQRQR RILKQRLKVP PALNQFTRTL DKNLATNLFK MLLKYRPEDK
101: AAKKERLLKR AQAEAEGKTV EAKKPIVVKY GLNHVTYLIE QSKAQLVVIA HDVDPIELVV WLPALCRKME VPYCIVKGKA RLGSIVHKKT ASVLCLTTVK
201: NEDKLEFSKI LEAIKANFND KFDEVRKKWG GGVMGSKSQA KTKAREKLLA KEAAQRMT
Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.