CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 3
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93955	Canola	cytosol	88.65	95.06
AT3G62870.1	Thale cress	cytosol	86.17	94.92
CDY55535	Canola	extracellular	31.91	94.74
CDX89154	Canola	cytosol	89.01	93.66
CDY66035	Canola	cytosol	85.46	92.69
CDX80121	Canola	cytosol	85.11	91.25
CDX83325	Canola	cytosol	86.52	89.71
CDX95727	Canola	cytosol	86.52	87.46
CDY11453	Canola	cytosol	91.49	86.58
KRH31699	Soybean	cytosol, nucleus	78.37	85.0
KRH69083	Soybean	nucleus	78.01	84.62
KRH29218	Soybean	endoplasmic reticulum, nucleus	77.31	84.17
KRH24214	Soybean	nucleus	77.31	84.17
TraesCS7A01G261600.1	Wheat	cytosol, plastid	76.95	84.11
TraesCS7D01G262800.2	Wheat	cytosol	76.95	84.11
Zm00001d006100_P001	Maize	plasma membrane	76.95	84.11
TraesCS7B01G159700.1	Wheat	cytosol	76.6	83.72
Os09t0507800-01	Rice	nucleus, plasma membrane	76.6	83.72
Os08t0326400-01	Rice	cytosol	76.6	83.72
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	76.6	83.72
Zm00001d031640_P001	Maize	mitochondrion	75.89	83.27
EER99158	Sorghum	cytosol	75.89	82.95
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	75.89	82.63
TraesCS5B01G287900.1	Wheat	cytosol	75.89	82.63
TraesCS5D01G296200.1	Wheat	cytosol	75.89	82.63
Os01t0924800-00	Rice	cytosol, golgi	46.1	82.28
HORVU7Hr1G054670.5	Barley	cytosol	76.95	80.37
GSMUA_Achr10P...	Banana	cytosol	75.53	79.78
GSMUA_Achr11P...	Banana	cytosol	75.18	76.53
HORVU5Hr1G076700.2	Barley	cytosol	76.6	76.06
CDX92144	Canola	extracellular	85.46	74.38
GSMUA_Achr3P03600_001	Banana	cytosol	74.47	73.17
KRH15988	Soybean	cytosol	20.21	73.08
CDY03061	Canola	extracellular	25.53	67.29
KXG35979	Sorghum	cytosol, mitochondrion	77.31	65.86
EES03046	Sorghum	cytosol	15.6	64.71
KXG25835	Sorghum	cytosol	15.6	64.71
CDY08962	Canola	endoplasmic reticulum, extracellular	24.47	64.49
CDY25121	Canola	cytosol	87.23	63.57
GSMUA_Achr6P21550_001	Banana	cytosol	75.18	61.1
CDY03403	Canola	cytosol	86.17	59.41
CDY34328	Canola	nucleus	84.75	59.16
GSMUA_Achr6P14640_001	Banana	cytosol	76.6	56.84
CDX92662	Canola	cytosol	81.21	55.31
CDY11043	Canola	cytosol	81.91	54.87
CDX67906	Canola	extracellular	85.11	54.18
CDY33717	Canola	cytosol	31.56	44.72
TraesCS4D01G148500.2	Wheat	cytosol	15.96	30.61
CDY55536	Canola	cytosol	7.8	21.15
CDX93958	Canola	cytosol	7.8	21.15
CDX89151	Canola	cytosol	7.8	20.95
CDY25120	Canola	cytosol	4.61	10.4

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:A0A078CNK9	EnsemblPlants:CDX76668	ProteinID:CDX76668	ProteinID:CDX76668.1
GO:GO:0005575	GO:GO:0008150	GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00127144001	InterPro:IPR029064
InterPro:IPR038524	InterPro:L30e-like	PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082
PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2
InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI0004EE17FF	SEG:seg	:	:

Description

BnaC08g32540D

Coordinates

chrLK031808:-:412266..413920

Molecular Weight (calculated)

32284.4 Da

IEP (calculated)

10.856

GRAVY (calculated)

-0.479

Length

282 amino acids

Sequence
(BLAST)

001: MLVIIKSYKA LIFVSPFDPL RRQSVAMAPK KGVKVVTKKK TEKVTNPLFE RRPKQFGIGG ALPPKKDLTR YIKWPKSIRL QRQKRILKQR LKVPPALNQF
101: TKTLDKNLAT QLFKLLMKYR PEDKAAKKDR LLKKAQAEAE GKPYESKKPI VVKYGLNHVT YLIEQNKAQL VVIAHDVDPI ELVVWLPALC RKMEVPYCIV
201: KGKSRLGTVV HQKTAACLCL TTVKNEDKLE FSKILEAIKA NFNDKYEEYR KKWGGGIMGS KSQAKTKAKE RVLAKEAAQR MN

Best Arabidopsis Sequence Match ( AT2G47610.1 )
(BLAST)

001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN

Arabidopsis Description

RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.