Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | CDY02344 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | CDY09519 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | CDY12454 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | CDY52188 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83325 | Canola | cytosol | 94.98 | 97.43 |
| AT2G47610.1 | Thale cress | cytosol | 87.81 | 95.33 |
| CDX93955 | Canola | cytosol | 87.46 | 92.78 |
| CDY55535 | Canola | extracellular | 31.18 | 91.58 |
| CDX89154 | Canola | cytosol | 87.81 | 91.42 |
| CDY66035 | Canola | cytosol | 83.87 | 90.0 |
| CDX80121 | Canola | cytosol | 83.87 | 88.97 |
| CDX76668 | Canola | extracellular | 87.46 | 86.52 |
| KRH24214 | Soybean | nucleus | 77.78 | 83.78 |
| Zm00001d006100_P001 | Maize | plasma membrane | 77.42 | 83.72 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 77.42 | 83.72 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 77.42 | 83.4 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 77.06 | 83.33 |
| KRH31699 | Soybean | cytosol, nucleus | 77.42 | 83.08 |
| EER99158 | Sorghum | cytosol | 76.7 | 82.95 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 76.7 | 82.95 |
| KRH69083 | Soybean | nucleus | 77.06 | 82.69 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 76.7 | 82.63 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 76.7 | 82.63 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 76.7 | 82.63 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 76.34 | 82.56 |
| Os08t0326400-01 | Rice | cytosol | 76.34 | 82.56 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 76.34 | 82.56 |
| Zm00001d031640_P001 | Maize | mitochondrion | 75.99 | 82.49 |
| CDY11453 | Canola | cytosol | 87.81 | 82.21 |
| Os01t0924800-00 | Rice | cytosol, golgi | 45.88 | 81.01 |
| GSMUA_Achr10P... | Banana | cytosol | 76.34 | 79.78 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 76.7 | 79.26 |
| GSMUA_Achr11P... | Banana | cytosol | 75.63 | 76.17 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 77.42 | 76.06 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 75.27 | 73.17 |
| CDX92144 | Canola | extracellular | 82.08 | 70.68 |
| KRH15988 | Soybean | cytosol | 19.35 | 69.23 |
| CDY03061 | Canola | extracellular | 25.81 | 67.29 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 77.06 | 64.95 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 24.01 | 62.62 |
| EES03046 | Sorghum | cytosol | 15.05 | 61.76 |
| KXG25835 | Sorghum | cytosol | 15.05 | 61.76 |
| CDY25121 | Canola | cytosol | 85.3 | 61.5 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 75.99 | 61.1 |
| CDY34328 | Canola | nucleus | 85.66 | 59.16 |
| CDY03403 | Canola | cytosol | 86.02 | 58.68 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 76.34 | 56.05 |
| CDY11043 | Canola | cytosol | 83.51 | 55.34 |
| CDX92662 | Canola | cytosol | 81.36 | 54.83 |
| CDX67906 | Canola | extracellular | 82.8 | 52.14 |
| CDY33717 | Canola | cytosol | 30.82 | 43.22 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 16.85 | 31.97 |
| CDY55536 | Canola | cytosol | 7.17 | 19.23 |
| CDX93958 | Canola | cytosol | 7.17 | 19.23 |
| CDX89151 | Canola | cytosol | 7.17 | 19.05 |
| CDY25120 | Canola | cytosol | 4.66 | 10.4 |
Protein Annotations
| MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | GO:A0A078E3K9 | EnsemblPlants:CDX95727 | ProteinID:CDX95727 | ProteinID:CDX95727.1 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0042254 | GO:GO:1990904 | EnsemblPlantsGene:GSBRNA2T00101629001 | InterPro:IPR029064 |
| InterPro:IPR038524 | InterPro:L30e-like | PFAM:PF01248 | PRINTS:PR00881 | PRINTS:PR00882 | ScanProsite:PS01082 |
| PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 |
| InterPro:Ribosomal_L7Ae_CS | SUPFAM:SSF55315 | UniParc:UPI0004EDD5B3 | SEG:seg | : | : |
Description
BnaC03g26080D
Coordinates
chrLK031890:+:981229..982797
Molecular Weight (calculated)
31531.1 Da
IEP (calculated)
10.780
GRAVY (calculated)
-0.476
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNDTLFNLS ISLHSFPFSL CVSLAPKKGV KVGAKKKTDK VANPLFERRP KQFGIGGALP PKKDLTRYIK WPKSIRLQRQ KRILKQRLKV PPALNQFTKT
101: LDKNLATSLF KILLKYRPED KAAKKERLVK KAQAEAEGKP SESKKPIVVK YGLNHVTYLI EQNKAQLVVI AHDVDPIELV VWLPALCRKM EVPYCIVKGK
201: SRLGAVVHQK TAACLCLTTV KNEDKLEFSK VLEAIKANFN DKYEEYRKKW GGGIMGSKSQ AKTKAKERVL AKEAAQRNN
101: LDKNLATSLF KILLKYRPED KAAKKERLVK KAQAEAEGKP SESKKPIVVK YGLNHVTYLI EQNKAQLVVI AHDVDPIELV VWLPALCRKM EVPYCIVKGK
201: SRLGAVVHQK TAACLCLTTV KNEDKLEFSK VLEAIKANFN DKYEEYRKKW GGGIMGSKSQ AKTKAKERVL AKEAAQRNN
001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN
Arabidopsis Description
RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.