CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93955	Canola	cytosol	62.79	92.4
AT3G62870.1	Thale cress	cytosol	60.47	91.41
CDX89154	Canola	cytosol	63.05	91.04
CDY66035	Canola	cytosol	60.21	89.62
CDX80121	Canola	cytosol	60.47	88.97
CDX83325	Canola	cytosol	61.76	87.87
CDX76668	Canola	extracellular	63.57	87.23
CDX95727	Canola	cytosol	61.5	85.3
CDY55535	Canola	extracellular	20.93	85.26
CDY11453	Canola	cytosol	64.08	83.22
TraesCS7D01G262800.2	Wheat	cytosol	55.04	82.56
Zm00001d006100_P001	Maize	plasma membrane	55.04	82.56
TraesCS7A01G261600.1	Wheat	cytosol, plastid	55.04	82.56
KRH31699	Soybean	cytosol, nucleus	55.3	82.31
KRH29218	Soybean	endoplasmic reticulum, nucleus	55.04	82.24
TraesCS7B01G159700.1	Wheat	cytosol	54.78	82.17
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	54.78	82.17
Os09t0507800-01	Rice	nucleus, plasma membrane	54.78	82.17
Os08t0326400-01	Rice	cytosol	54.78	82.17
KRH69083	Soybean	nucleus	55.04	81.92
KRH24214	Soybean	nucleus	54.78	81.85
EER99158	Sorghum	cytosol	54.52	81.78
Zm00001d031640_P001	Maize	mitochondrion	54.26	81.71
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	54.26	81.08
TraesCS5B01G287900.1	Wheat	cytosol	54.26	81.08
TraesCS5D01G296200.1	Wheat	cytosol	54.26	81.08
HORVU7Hr1G054670.5	Barley	cytosol	55.04	78.89
Os01t0924800-00	Rice	cytosol, golgi	32.04	78.48
GSMUA_Achr10P...	Banana	cytosol	54.01	78.28
GSMUA_Achr11P...	Banana	cytosol	54.52	76.17
KRH15988	Soybean	cytosol	15.25	75.64
HORVU5Hr1G076700.2	Barley	cytosol	55.04	75.0
CDX92144	Canola	extracellular	61.76	73.77
GSMUA_Achr3P03600_001	Banana	cytosol	53.49	72.13
KXG35979	Sorghum	cytosol, mitochondrion	56.33	65.86
GSMUA_Achr6P21550_001	Banana	cytosol	55.04	61.38
CDY08962	Canola	endoplasmic reticulum, extracellular	16.8	60.75
CDX67906	Canola	extracellular	67.7	59.14
CDY03061	Canola	extracellular	16.28	58.88
GSMUA_Achr6P14640_001	Banana	cytosol	56.07	57.11
CDY03403	Canola	cytosol	59.95	56.72
CDY34328	Canola	nucleus	59.17	56.68
KXG25835	Sorghum	cytosol	9.82	55.88
EES03046	Sorghum	cytosol	9.82	55.88
CDX92662	Canola	cytosol	57.62	53.86
CDY11043	Canola	cytosol	56.33	51.78
CDY33717	Canola	cytosol	23.26	45.23
TraesCS4D01G148500.2	Wheat	cytosol	11.89	31.29
CDY55536	Canola	cytosol	5.94	22.12
CDX93958	Canola	cytosol	5.94	22.12
CDX89151	Canola	cytosol	5.94	21.9
CDY25120	Canola	cytosol	3.36	10.4

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:A0A078GIC7	UniProt:A0A078GIC7	EnsemblPlants:CDY25121	ProteinID:CDY25121
ProteinID:CDY25121.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0030529
GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00028995001	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like
PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70
InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315
UniParc:UPI0004EE3581	SEG:seg	:	:	:	:

Description

BnaC06g18630DBnaC06g18630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIC7]

Coordinates

chrLK032168:-:562153..564559

Molecular Weight (calculated)

43333.2 Da

IEP (calculated)

10.694

GRAVY (calculated)

-0.552

Length

387 amino acids

Sequence
(BLAST)

001: MRRGQVAAGR VHVEERSADE GVSVKTKEKN LSVGSSAERK VSGVVERREK KGESVKVGCD GVAAHTEVDG EGRMWGEIVM KSGANDENPN ASQSLPLSPP
101: SASRNRQHPM APKRGVKVVA KKKTEKVTNP LFERRPKQFG IGGALPPKKD LTRYIKWPKS IRLQRQKRIL KQRLKVPPAL NQFTKTLDKN LATQLFKVLM
201: KYRPEDKAAK KDRLLKKAQA EAEGKPSESK KPIVVKYGLN HVTYLIEQNK AQLVVIAHDV DPIELVVWLP ALCRKMEVPY CIVKGKSRLG TVVHQKTAAC
301: LCLTTVKNED KLEFSKILEA IKANFNDKYE EYRKKWGGGI MGSKSQAKTK AKERCKRSSF RYGFMIGTCF LDLVLKQASL CLITVSL

Best Arabidopsis Sequence Match ( AT2G47610.1 )
(BLAST)

001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN

Arabidopsis Description

RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.