CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY02344
CDY09519
CDY12454
CDY52188

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	CDY02344	AT1G30860.1	21798944
AT2G47610.1	CDY09519	AT1G30860.1	21798944
AT2G47610.1	CDY12454	AT1G30860.1	21798944
AT2G47610.1	CDY52188	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000455.1-P	Field mustard	cytosol	100.0	100.0
AT2G47610.1	Thale cress	cytosol	90.44	95.72
CDX95727	Canola	cytosol	97.43	94.98
CDX93955	Canola	cytosol	90.44	93.54
CDX89154	Canola	cytosol	90.81	92.16
CDY55535	Canola	extracellular	31.99	91.58
CDY66035	Canola	cytosol	87.13	91.15
CDX80121	Canola	cytosol	86.4	89.35
CDX76668	Canola	extracellular	89.71	86.52
KRH29218	Soybean	endoplasmic reticulum, nucleus	80.15	84.17
KRH24214	Soybean	nucleus	80.15	84.17
Zm00001d006100_P001	Maize	plasma membrane	79.78	84.11
TraesCS7A01G261600.1	Wheat	cytosol, plastid	79.78	84.11
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	79.41	83.72
KRH31699	Soybean	cytosol, nucleus	79.78	83.46
TraesCS7D01G262800.2	Wheat	cytosol	79.04	83.33
KRH69083	Soybean	nucleus	79.41	83.08
TraesCS7B01G159700.1	Wheat	cytosol	78.68	82.95
Os09t0507800-01	Rice	nucleus, plasma membrane	78.68	82.95
Os08t0326400-01	Rice	cytosol	78.68	82.95
EER99158	Sorghum	cytosol	78.68	82.95
Zm00001d031640_P001	Maize	mitochondrion	78.31	82.88
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	78.68	82.63
TraesCS5B01G287900.1	Wheat	cytosol	78.68	82.63
TraesCS5D01G296200.1	Wheat	cytosol	78.68	82.63
CDY11453	Canola	cytosol	90.07	82.21
Os01t0924800-00	Rice	cytosol, golgi	47.06	81.01
GSMUA_Achr10P...	Banana	cytosol	78.31	79.78
HORVU7Hr1G054670.5	Barley	cytosol	79.04	79.63
GSMUA_Achr11P...	Banana	cytosol	77.94	76.53
HORVU5Hr1G076700.2	Barley	cytosol	79.04	75.7
GSMUA_Achr3P03600_001	Banana	cytosol	76.84	72.82
CDX92144	Canola	extracellular	84.19	70.68
KRH15988	Soybean	cytosol	20.22	70.51
CDY03061	Canola	extracellular	26.47	67.29
KXG35979	Sorghum	cytosol, mitochondrion	79.04	64.95
CDY08962	Canola	endoplasmic reticulum, extracellular	25.0	63.55
KXG25835	Sorghum	cytosol	15.44	61.76
EES03046	Sorghum	cytosol	15.44	61.76
CDY25121	Canola	cytosol	87.87	61.76
GSMUA_Achr6P21550_001	Banana	cytosol	77.21	60.52
CDY03403	Canola	cytosol	88.97	59.17
CDY34328	Canola	nucleus	87.5	58.91
GSMUA_Achr6P14640_001	Banana	cytosol	78.68	56.32
CDY11043	Canola	cytosol	85.29	55.11
CDX92662	Canola	cytosol	83.82	55.07
CDX67906	Canola	extracellular	85.66	52.6
CDY33717	Canola	cytosol	31.25	42.71
TraesCS4D01G148500.2	Wheat	cytosol	17.28	31.97
CDY55536	Canola	cytosol	7.35	19.23
CDX93958	Canola	cytosol	7.35	19.23
CDX89151	Canola	cytosol	7.35	19.05
CDY25120	Canola	cytosol	4.78	10.4

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:A0A078D2H2	EnsemblPlants:CDX83325	ProteinID:CDX83325	ProteinID:CDX83325.1
ncoils:Coil	GO:GO:0005575	GO:GO:0008150	GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00138887001
InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like	PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882
ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45
InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI000253FF35	SEG:seg	:

Description

BnaA03g21810D

Coordinates

chrLK031832:-:1058008..1059405

Molecular Weight (calculated)

30815.3 Da

IEP (calculated)

10.780

GRAVY (calculated)

-0.476

Length

272 amino acids

Sequence
(BLAST)

001: MVELSLHSFP FSLCISLAPK KGVKVAAKKK TDKVTNPLFE RRPKQFGIGG ALPPKKDLTR YIKWPKSIRL QRQKRILKQR LKVPPALNQF TKTLDKNLAT
101: SLFKILLKYR PEDKAAKKER LVKKAQAEAE GKPSESKKPI VVKYGLNHVT YLIEQNKAQL VVIAHDVDPI ELVVWLPALC RKMEVPYCIV KGKSRLGAVV
201: HQKTAACLCL TTVKNEDKLE FSKVLEAIKA NFNDKYEEYR KKWGGGIMGS KSQAKTKAKE RVLAKEAAQR NN

Best Arabidopsis Sequence Match ( AT2G47610.1 )
(BLAST)

001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN

Arabidopsis Description

RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.