Subcellular Localization
min:
: max
Winner_takes_all: unclear, plastid, cytosol, golgi, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
golgi: 25769308 unclear: 25769308 nucleus: 26228564 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G229600.2 | |
| TraesCS2B01G251300.1 | |
| TraesCS2D01G233500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | TraesCS2A01G229600.2 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | TraesCS2B01G251300.1 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | TraesCS2D01G233500.1 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G296200.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 98.46 | 98.84 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 95.37 | 95.74 |
| Os08t0326400-01 | Rice | cytosol | 95.37 | 95.74 |
| EER99158 | Sorghum | cytosol | 95.37 | 95.74 |
| Zm00001d006100_P001 | Maize | plasma membrane | 94.21 | 94.57 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 93.82 | 94.19 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 99.61 | 90.85 |
| GSMUA_Achr10P... | Banana | cytosol | 90.35 | 87.64 |
| KRH24214 | Soybean | nucleus | 87.26 | 87.26 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 86.87 | 86.87 |
| KRH69083 | Soybean | nucleus | 86.1 | 85.77 |
| KRH31699 | Soybean | cytosol, nucleus | 86.1 | 85.77 |
| AT2G47610.1 | Thale cress | cytosol | 84.56 | 85.21 |
| GSMUA_Achr11P... | Banana | cytosol | 91.12 | 85.2 |
| AT3G62870.1 | Thale cress | cytosol | 83.4 | 84.38 |
| Bra014387.1-P | Field mustard | cytosol | 83.4 | 84.38 |
| Bra004442.1-P | Field mustard | cytosol | 83.4 | 84.38 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 91.89 | 82.93 |
| CDX93955 | Canola | cytosol | 82.63 | 81.37 |
| CDY55535 | Canola | extracellular | 29.73 | 81.05 |
| CDX89154 | Canola | cytosol | 83.4 | 80.6 |
| KRH15988 | Soybean | cytosol | 23.94 | 79.49 |
| CDY66035 | Canola | cytosol | 79.15 | 78.85 |
| Bra000455.1-P | Field mustard | cytosol | 82.63 | 78.68 |
| CDX83325 | Canola | cytosol | 82.63 | 78.68 |
| PGSC0003DMT400008912 | Potato | cytosol, plastid | 77.22 | 78.43 |
| CDX80121 | Canola | cytosol | 79.15 | 77.95 |
| Solyc01g097760.2.1 | Tomato | nucleus | 77.61 | 77.91 |
| PGSC0003DMT400057989 | Potato | cytosol | 77.61 | 77.91 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 77.22 | 77.52 |
| Solyc06g064470.2.1 | Tomato | nucleus | 77.22 | 77.52 |
| Solyc06g050120.2.1 | Tomato | nucleus | 77.22 | 77.22 |
| CDX95727 | Canola | cytosol | 82.63 | 76.7 |
| VIT_14s0068g01640.t01 | Wine grape | mitochondrion | 88.42 | 76.33 |
| VIT_17s0000g00980.t01 | Wine grape | cytosol | 88.03 | 76.0 |
| CDX76668 | Canola | extracellular | 82.63 | 75.89 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 87.64 | 75.42 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 95.37 | 74.62 |
| PGSC0003DMT400083237 | Potato | cytosol | 70.27 | 73.09 |
| CDY11453 | Canola | cytosol | 83.01 | 72.15 |
| PGSC0003DMT400015879 | Potato | cytosol | 40.93 | 72.11 |
| Solyc10g018810.1.1 | Tomato | cytosol | 20.85 | 70.13 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 90.73 | 67.72 |
| GSMUA_Achr6P14640_001 | Banana | cytosol | 91.89 | 62.63 |
| CDX92144 | Canola | extracellular | 77.22 | 61.73 |
| CDY03061 | Canola | extracellular | 25.1 | 60.75 |
| Solyc01g020290.1.1 | Tomato | cytosol | 12.36 | 59.26 |
| Solyc11g042870.1.1 | Tomato | cytosol | 19.69 | 57.95 |
| CDY25121 | Canola | cytosol | 81.08 | 54.26 |
| CDY34328 | Canola | nucleus | 83.4 | 53.47 |
| Bra013849.1-P | Field mustard | cytosol | 83.4 | 53.47 |
| CDY03403 | Canola | cytosol | 83.01 | 52.57 |
| CDX92662 | Canola | cytosol | 77.61 | 48.55 |
| Bra003512.1-P | Field mustard | cytosol | 75.68 | 48.4 |
| CDY11043 | Canola | cytosol | 77.99 | 47.98 |
| Bra019201.1-P | Field mustard | cytosol | 77.99 | 47.98 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 19.69 | 47.66 |
| CDX67906 | Canola | extracellular | 79.54 | 46.5 |
| CDY33717 | Canola | cytosol | 31.66 | 41.21 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 22.01 | 38.78 |
| CDY55536 | Canola | cytosol | 10.42 | 25.96 |
| CDX93958 | Canola | cytosol | 10.42 | 25.96 |
| CDX89151 | Canola | cytosol | 10.42 | 25.71 |
| CDY25120 | Canola | cytosol | 7.34 | 15.2 |
Protein Annotations
| MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0042254 |
| GO:GO:1990904 | InterPro:IPR029064 | InterPro:IPR038524 | InterPro:L30e-like | PFAM:PF01248 | PRINTS:PR00881 |
| PRINTS:PR00882 | ScanProsite:PS01082 | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 | InterPro:Ribosomal_L7A/L8_sf |
| InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 | InterPro:Ribosomal_L7Ae_CS | SUPFAM:SSF55315 | EnsemblPlantsGene:TraesCS5A01G288400 | EnsemblPlants:TraesCS5A01G288400.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:495883097..495884994
Molecular Weight (calculated)
29410.8 Da
IEP (calculated)
11.088
GRAVY (calculated)
-0.480
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPKRGGKAP VPAKKKAADK VVNPLFEKRP KQFGIGGALP PKKDLHRFVK WPKVVRIQRQ RRILKQRLKV PPALHQFTRT LDKNLATNLF KMLLKYRPED
101: KVAKKERLLK RAQAEAEGKT VEAKKPIVVK YGLNHVTYLI EQSKAQLVVI AHDVDPIELV VWLPALCRKM EVPYCIVKGK SRLGSIVHKK TASVLCLTTV
201: KNEDKLEFSK ILEAIKANFN DKFDEVRKKW GGGVMGSKSQ AKTKARERLI AKEAAQRMN
101: KVAKKERLLK RAQAEAEGKT VEAKKPIVVK YGLNHVTYLI EQSKAQLVVI AHDVDPIELV VWLPALCRKM EVPYCIVKGK SRLGSIVHKK TASVLCLTTV
201: KNEDKLEFSK ILEAIKANFN DKFDEVRKKW GGGVMGSKSQ AKTKARERLI AKEAAQRMN
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.