CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11453	Canola	cytosol	86.73	94.3
CDX93955	Canola	cytosol	72.53	89.35
AT3G62870.1	Thale cress	cytosol	70.06	88.67
CDX89154	Canola	cytosol	72.84	88.06
CDY66035	Canola	cytosol	69.44	86.54
CDX80121	Canola	cytosol	69.44	85.55
CDX76668	Canola	extracellular	74.38	85.46
CDX83325	Canola	cytosol	70.68	84.19
CDX95727	Canola	cytosol	70.68	82.08
KRH31699	Soybean	cytosol, nucleus	63.89	79.62
KRH69083	Soybean	nucleus	63.58	79.23
KRH29218	Soybean	endoplasmic reticulum, nucleus	63.27	79.15
Zm00001d006100_P001	Maize	plasma membrane	62.96	79.07
KRH24214	Soybean	nucleus	62.96	78.76
TraesCS7A01G261600.1	Wheat	cytosol, plastid	62.65	78.68
TraesCS7D01G262800.2	Wheat	cytosol	62.65	78.68
Os09t0507800-01	Rice	nucleus, plasma membrane	62.65	78.68
Os08t0326400-01	Rice	cytosol	62.65	78.68
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	62.65	78.68
TraesCS7B01G159700.1	Wheat	cytosol	62.35	78.29
EER99158	Sorghum	cytosol	62.35	78.29
Zm00001d031640_P001	Maize	mitochondrion	62.04	78.21
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	61.73	77.22
TraesCS5B01G287900.1	Wheat	cytosol	61.73	77.22
TraesCS5D01G296200.1	Wheat	cytosol	61.73	77.22
CDY55535	Canola	extracellular	22.53	76.84
GSMUA_Achr10P...	Banana	cytosol	62.65	76.03
HORVU7Hr1G054670.5	Barley	cytosol	62.65	75.19
KRH15988	Soybean	cytosol	17.9	74.36
Os01t0924800-00	Rice	cytosol, golgi	35.8	73.42
GSMUA_Achr11P...	Banana	cytosol	62.35	72.92
HORVU5Hr1G076700.2	Barley	cytosol	62.35	71.13
GSMUA_Achr3P03600_001	Banana	cytosol	61.73	69.69
KXG35979	Sorghum	cytosol, mitochondrion	63.58	62.24
CDY25121	Canola	cytosol	73.77	61.76
CDY08962	Canola	endoplasmic reticulum, extracellular	19.75	59.81
GSMUA_Achr6P21550_001	Banana	cytosol	61.73	57.64
CDY34328	Canola	nucleus	68.83	55.2
CDY03403	Canola	cytosol	68.52	54.28
GSMUA_Achr6P14640_001	Banana	cytosol	63.27	53.95
CDX67906	Canola	extracellular	72.84	53.27
CDY03061	Canola	extracellular	16.98	51.4
CDX92662	Canola	cytosol	64.51	50.48
CDY11043	Canola	cytosol	65.12	50.12
EES03046	Sorghum	cytosol	10.49	50.0
KXG25835	Sorghum	cytosol	9.88	47.06
CDY33717	Canola	cytosol	27.16	44.22
TraesCS4D01G148500.2	Wheat	cytosol	14.51	31.97
CDY55536	Canola	cytosol	6.79	21.15
CDX93958	Canola	cytosol	6.79	21.15
CDX89151	Canola	cytosol	6.79	20.95
CDY25120	Canola	cytosol	4.01	10.4

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:A0A078DUM4	EnsemblPlants:CDX92144	ProteinID:CDX92144	ProteinID:CDX92144.1
GO:GO:0005575	GO:GO:0008150	GO:GO:0042254	GO:GO:1990904	EnsemblPlantsGene:GSBRNA2T00153843001	InterPro:IPR029064
InterPro:IPR038524	InterPro:L30e-like	PFAM:PF01248	PRINTS:PR00881	PRINTS:PR00882	ScanProsite:PS01082
PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2
InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI0004EF36D8	SEG:seg	:	:

Description

BnaA05g22630D

Coordinates

chrLK031871:-:495477..497020

Molecular Weight (calculated)

36378.1 Da

IEP (calculated)

10.772

GRAVY (calculated)

-0.613

Length

324 amino acids

Sequence
(BLAST)

001: MFGPENYFCP TPKMKLKKKE CDKHETLNWS LSLPLSAVPS VAMAPKKGVK VVAKKKTEKV TNPLFERRPK QFGIGGALPP KKDLTRYIKW PKSIRLQRQK
101: RILKQRLKVP PALNQFTKTL DKNLATQLFK LLMKYRPEDK AAKKDRLLKK AQAEAEGKPS ESKKPIVVKY GLNHVTYLIE QNKAQLVVIA HDVDPIELVV
201: WLPALCRKME VPYCIVKGKS RLGTVVHQKT AACLCLTTVK NEDKLEFSKI LEAIKANFND KYEEYRKKWG GGIMGSKPKP KPKPKPTPTP TPKPTPTPTP
301: TPSRAEPSRP DGGGGARVGS SLFL

Best Arabidopsis Sequence Match ( AT2G47610.1 )
(BLAST)

001: MAPKKGVKVA AKKKTAEKVS NPLFERRPKQ FGIGGALPPK KDLSRYIKWP KSIRLQRQKR ILKQRLKVPP ALNQFTKTLD KNLATSLFKV LLKYRPEDKA
101: AKKERLVKKA QAEAEGKPSE SKKPIVVKYG LNHVTYLIEQ NKAQLVVIAH DVDPIELVVW LPALCRKMEV PYCIVKGKSR LGAVVHQKTA SCLCLTTVKN
201: EDKLEFSKIL EAIKANFNDK YEEYRKKWGG GIMGSKSQAK TKAKERVIAK EAAQRMN

Arabidopsis Description

RPL7AA60S ribosomal protein L7a-1 [Source:UniProtKB/Swiss-Prot;Acc:P49692]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.