Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P33210_001 | |
| GSMUA_Achr7P00390_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47610.1 | GSMUA_Achr4P33210_001 | AT1G30860.1 | 21798944 |
| AT2G47610.1 | GSMUA_Achr7P00390_001 | AT1G30860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0326400-01 | Rice | cytosol | 63.95 | 94.19 |
| EER99158 | Sorghum | cytosol | 63.95 | 94.19 |
| Os09t0507800-01 | Rice | nucleus, plasma membrane | 63.95 | 94.19 |
| Zm00001d006100_P001 | Maize | plasma membrane | 63.95 | 94.19 |
| GSMUA_Achr10P... | Banana | cytosol | 66.05 | 94.01 |
| Zm00001d021061_P001 | Maize | cytosol, mitochondrion, plasma membrane | 63.68 | 93.8 |
| Zm00001d031640_P001 | Maize | mitochondrion | 63.42 | 93.77 |
| TraesCS7D01G262800.2 | Wheat | cytosol | 62.63 | 92.25 |
| TraesCS7A01G261600.1 | Wheat | cytosol, plastid | 62.63 | 92.25 |
| TraesCS5D01G296200.1 | Wheat | cytosol | 62.63 | 91.89 |
| TraesCS5B01G287900.1 | Wheat | cytosol | 62.63 | 91.89 |
| TraesCS5A01G288400.1 | Wheat | cytosol, golgi, nucleus, plastid, unclear | 62.63 | 91.89 |
| TraesCS7B01G159700.1 | Wheat | cytosol | 62.37 | 91.86 |
| Os01t0924800-00 | Rice | cytosol, golgi | 38.16 | 91.77 |
| GSMUA_Achr11P... | Banana | cytosol | 65.79 | 90.25 |
| KRH29218 | Soybean | endoplasmic reticulum, nucleus | 61.05 | 89.58 |
| KRH24214 | Soybean | nucleus | 61.05 | 89.58 |
| HORVU7Hr1G054670.5 | Barley | cytosol | 62.89 | 88.52 |
| KRH69083 | Soybean | nucleus | 60.26 | 88.08 |
| KRH31699 | Soybean | cytosol, nucleus | 60.26 | 88.08 |
| GSMUA_Achr3P03600_001 | Banana | cytosol | 65.79 | 87.11 |
| HORVU5Hr1G076700.2 | Barley | cytosol | 63.68 | 85.21 |
| AT2G47610.1 | Thale cress | cytosol | 57.11 | 84.44 |
| AT3G62870.1 | Thale cress | cytosol | 56.84 | 84.38 |
| Bra004442.1-P | Field mustard | cytosol | 56.84 | 84.38 |
| Bra014387.1-P | Field mustard | cytosol | 56.32 | 83.59 |
| KRH15988 | Soybean | cytosol | 17.11 | 83.33 |
| CDX93955 | Canola | cytosol | 56.32 | 81.37 |
| VIT_17s0000g00980.t01 | Wine grape | cytosol | 63.16 | 80.0 |
| CDX89154 | Canola | cytosol | 56.32 | 79.85 |
| CDY66035 | Canola | cytosol | 54.21 | 79.23 |
| CDX83325 | Canola | cytosol | 56.32 | 78.68 |
| Bra000455.1-P | Field mustard | cytosol | 56.32 | 78.68 |
| PGSC0003DMT400008912 | Potato | cytosol, plastid | 52.63 | 78.43 |
| Solyc01g097760.2.1 | Tomato | nucleus | 53.16 | 78.29 |
| PGSC0003DMT400057989 | Potato | cytosol | 53.16 | 78.29 |
| CDX80121 | Canola | cytosol | 53.95 | 77.95 |
| Solyc06g064470.2.1 | Tomato | nucleus | 52.89 | 77.91 |
| Solyc06g064460.2.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 52.89 | 77.91 |
| CDY55535 | Canola | extracellular | 19.47 | 77.89 |
| Solyc06g050120.2.1 | Tomato | nucleus | 52.89 | 77.61 |
| VIT_14s0083g00970.t01 | Wine grape | plastid | 60.79 | 76.74 |
| VIT_14s0068g01640.t01 | Wine grape | mitochondrion | 60.53 | 76.67 |
| CDX76668 | Canola | extracellular | 56.84 | 76.6 |
| CDX95727 | Canola | cytosol | 56.05 | 76.34 |
| KXG35979 | Sorghum | cytosol, mitochondrion | 65.79 | 75.53 |
| PGSC0003DMT400015879 | Potato | cytosol | 28.68 | 74.15 |
| CDY11453 | Canola | cytosol | 57.37 | 73.15 |
| PGSC0003DMT400083237 | Potato | cytosol | 47.89 | 73.09 |
| GSMUA_Achr6P21550_001 | Banana | cytosol | 66.58 | 72.91 |
| Solyc10g018810.1.1 | Tomato | cytosol | 13.95 | 68.83 |
| EES03046 | Sorghum | cytosol | 12.11 | 67.65 |
| KXG25835 | Sorghum | cytosol | 11.84 | 66.18 |
| CDX92144 | Canola | extracellular | 53.95 | 63.27 |
| Solyc01g020290.1.1 | Tomato | cytosol | 8.42 | 59.26 |
| CDY03061 | Canola | extracellular | 16.58 | 58.88 |
| Solyc11g042870.1.1 | Tomato | cytosol | 13.16 | 56.82 |
| CDY25121 | Canola | cytosol | 57.11 | 56.07 |
| Bra013849.1-P | Field mustard | cytosol | 58.42 | 54.95 |
| CDY34328 | Canola | nucleus | 58.42 | 54.95 |
| CDY03403 | Canola | cytosol | 57.11 | 53.06 |
| CDX92662 | Canola | cytosol | 56.05 | 51.45 |
| CDY08962 | Canola | endoplasmic reticulum, extracellular | 14.47 | 51.4 |
| Bra019201.1-P | Field mustard | cytosol | 55.26 | 49.88 |
| CDY11043 | Canola | cytosol | 55.26 | 49.88 |
| Bra003512.1-P | Field mustard | cytosol | 51.84 | 48.64 |
| CDX67906 | Canola | extracellular | 55.79 | 47.86 |
| CDY33717 | Canola | cytosol | 22.11 | 42.21 |
| TraesCS4D01G148500.2 | Wheat | cytosol | 14.74 | 38.1 |
| CDY55536 | Canola | cytosol | 6.32 | 23.08 |
| CDX93958 | Canola | cytosol | 6.32 | 23.08 |
| CDX89151 | Canola | cytosol | 6.32 | 22.86 |
| CDY25120 | Canola | cytosol | 4.74 | 14.4 |
Protein Annotations
| MapMan:17.1.2.1.6 | Gene3D:3.30.1330.210 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0030529 | GO:GO:0042254 | GO:GO:1990904 | EnsemblPlantsGene:GSMUA_Achr6G14640_001 | EnsemblPlants:GSMUA_Achr6P14640_001 |
| EnsemblPlants:GSMUA_Achr6T14640_001 | InterPro:IPR029064 | InterPro:IPR038524 | InterPro:L30e-like | UniProt:M0T712 | PFAM:PF01248 |
| PRINTS:PR00881 | PRINTS:PR00882 | ScanProsite:PS01082 | PANTHER:PTHR23105 | PANTHER:PTHR23105:SF70 | InterPro:Ribosomal_L7A/L8 |
| InterPro:Ribosomal_L7A/L8_sf | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_L7Ae/L8/Nhp2 | InterPro:Ribosomal_L7Ae_CS | SUPFAM:SSF55315 | UniParc:UPI000296EA8F |
| SEG:seg | : | : | : | : | : |
Description
60S ribosomal protein L7a [Source:GMGC_GENE;Acc:GSMUA_Achr6G14640_001]
Coordinates
chr6:-:9706051..9710639
Molecular Weight (calculated)
43186.5 Da
IEP (calculated)
11.370
GRAVY (calculated)
-0.576
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLRGFEVI DAIKARTRGI TLQGDCVLRR HPWPCNSRKC RTVWRTVLGG ISRPRGREDD KPGLRHGEPS AAQRELIRPR FLVRLQGTRS LGRDLALRRT
101: HRRPSTLHQL PPPASTATET DEMAPKRGGK AAVPAKKKPE KVVNPLFEKR PKQFGIGGAL PPKKDLHRFV KWPKVVRIQR QKRILKQRLK VPPALNQFTR
201: TLDKNLATNL FKMLLKYRPE DRAAKKERLL KRAQAEAEGK TVEVKKPIVV KYGLNHVTYL IEQNKAQLVV IAHDVDPIEL VVWLPALCRK MEIPYCIVKG
301: KARLGAIVHK KTASVLCLTT VKNEDKLEFS KILEAIKANF NDKFDEIRRK WGGGIMGSKS QAKAKAREKL LAKEAAQRMS
101: HRRPSTLHQL PPPASTATET DEMAPKRGGK AAVPAKKKPE KVVNPLFEKR PKQFGIGGAL PPKKDLHRFV KWPKVVRIQR QKRILKQRLK VPPALNQFTR
201: TLDKNLATNL FKMLLKYRPE DRAAKKERLL KRAQAEAEGK TVEVKKPIVV KYGLNHVTYL IEQNKAQLVV IAHDVDPIEL VVWLPALCRK MEIPYCIVKG
301: KARLGAIVHK KTASVLCLTT VKNEDKLEFS KILEAIKANF NDKFDEIRRK WGGGIMGSKS QAKAKAREKL LAKEAAQRMS
001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN
Arabidopsis Description
RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.