Factsheet for PGSC0003DMT400083237

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029374
PGSC0003DMT400035458

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47610.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT2G47610.1	PGSC0003DMT400035458	AT1G30860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g064470.2.1	Tomato	nucleus	92.37	89.15
PGSC0003DMT400057989	Potato	cytosol	92.37	89.15
PGSC0003DMT400015879	Potato	cytosol	52.21	88.44
PGSC0003DMT400008912	Potato	cytosol, plastid	89.16	87.06
KRH31699	Soybean	cytosol, nucleus	74.7	71.54
KRH29218	Soybean	endoplasmic reticulum, nucleus	74.3	71.43
KRH24214	Soybean	nucleus	74.3	71.43
KRH69083	Soybean	nucleus	74.3	71.15
Os09t0507800-01	Rice	nucleus, plasma membrane	73.49	70.93
Os08t0326400-01	Rice	cytosol	73.49	70.93
EER99158	Sorghum	cytosol	73.49	70.93
AT2G47610.1	Thale cress	cytosol	73.09	70.82
Zm00001d006100_P001	Maize	plasma membrane	73.09	70.54
TraesCS7A01G261600.1	Wheat	cytosol, plastid	73.09	70.54
Zm00001d031640_P001	Maize	mitochondrion	72.69	70.43
TraesCS5A01G288400.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	73.09	70.27
TraesCS5B01G287900.1	Wheat	cytosol	73.09	70.27
TraesCS5D01G296200.1	Wheat	cytosol	73.09	70.27
Zm00001d021061_P001	Maize	cytosol, mitochondrion, plasma membrane	72.69	70.16
TraesCS7D01G262800.2	Wheat	cytosol	72.69	70.16
Bra014387.1-P	Field mustard	cytosol	71.89	69.92
AT3G62870.1	Thale cress	cytosol	71.89	69.92
TraesCS7B01G159700.1	Wheat	cytosol	72.29	69.77
Bra004442.1-P	Field mustard	cytosol	71.49	69.53
GSMUA_Achr10P...	Banana	cytosol	73.09	68.16
Bra000455.1-P	Field mustard	cytosol	73.09	66.91
HORVU7Hr1G054670.5	Barley	cytosol	72.29	66.67
GSMUA_Achr11P...	Banana	cytosol	72.69	65.34
HORVU5Hr1G076700.2	Barley	cytosol	73.49	64.44
KRH15988	Soybean	cytosol	20.08	64.1
Os01t0924800-00	Rice	cytosol, golgi	40.56	63.92
GSMUA_Achr3P03600_001	Banana	cytosol	71.49	62.02
VIT_14s0083g00970.t01	Wine grape	plastid	73.09	60.47
KXG35979	Sorghum	cytosol, mitochondrion	73.49	55.29
GSMUA_Achr6P21550_001	Banana	cytosol	71.49	51.3
GSMUA_Achr6P14640_001	Banana	cytosol	73.09	47.89
Bra019201.1-P	Field mustard	cytosol	77.11	45.61
Bra013849.1-P	Field mustard	cytosol	72.29	44.55
Bra003512.1-P	Field mustard	cytosol	66.27	40.74
EES03046	Sorghum	cytosol	9.64	35.29
KXG25835	Sorghum	cytosol	8.84	32.35
TraesCS4D01G148500.2	Wheat	cytosol	18.47	31.29
CDX93958	Canola	cytosol	9.64	23.08
CDY55536	Canola	cytosol	9.64	23.08
CDX89151	Canola	cytosol	9.64	22.86
CDY25120	Canola	cytosol	5.22	10.4

Protein Annotations

MapMan:17.1.2.1.6	Gene3D:3.30.1330.210	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0030529	GO:GO:0042254	GO:GO:1990904	InterPro:IPR029064	InterPro:IPR038524	InterPro:L30e-like
UniProt:M1D6R4	PFAM:PF01248	EnsemblPlantsGene:PGSC0003DMG400033137	PGSC:PGSC0003DMG400033137	EnsemblPlants:PGSC0003DMT400083237	PRINTS:PR00881
PRINTS:PR00882	ScanProsite:PS01082	PANTHER:PTHR23105	PANTHER:PTHR23105:SF70	InterPro:Ribosomal_L7A/L8	InterPro:Ribosomal_L7A/L8_sf
InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_L7Ae/L8/Nhp2	InterPro:Ribosomal_L7Ae_CS	SUPFAM:SSF55315	UniParc:UPI000294804C	SEG:seg

Description

60S ribosomal protein L7A [Source:PGSC_GENE;Acc:PGSC0003DMG400033137]

Coordinates

chr6:+:47761424..47767429

Molecular Weight (calculated)

28686.8 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.604

Length

249 amino acids

Sequence
(BLAST)

001: MAPKKGVAVA AKKKPEKAKV VNPLFEKRPK QFGIGGALPP KKDVTRNVRW PRNVTLQRKK RILKMRLKVP PALNQFTKTL DKNLATNLFK MLLKYRPEDK
101: AAKKERLVKR AQAEAEGKTP ETKKPIIVKY GLKHITYLIE QNKAQLVVIA HDVDPIELVV WLPALCRKME IPYCIVKGKA RLGSIVHKKT ASALCLTTVK
201: NEDKMEFSRV LEAIKANFND KYEENRKKWG WWVSWAPSHR PGPRPRRKF

Best Arabidopsis Sequence Match ( AT3G62870.1 )
(BLAST)

001: MAPKKGVKVA SKKKPEKVTN PLFERRPKQF GIGGALPPKK DLSRYIKWPK SIRLQRQKRI LKQRLKVPPA LNQFTKTLDK NLATSLFKIL LKYRPEDKAA
101: KKERLLNKAQ AEAEGKPAES KKPIVVKYGL NHVTYLIEQN KAQLVVIAHD VDPIELVVWL PALCRKMEVP YCIVKGKSRL GAVVHQKTAA ALCLTTVKNE
201: DKLEFSKILE AIKANFNDKY EEYRKKWGGG IMGSKSQAKT KAKERVIAKE AAQRMN

Arabidopsis Description

RPL7AB60S ribosomal protein L7a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.