CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74770
CDX82688
CDX83788
CDX89363
CDX93551
CDX94372
CDX95048
CDX96681
CDY06320
CDY18894
CDY21663
CDY22675
CDY26701
CDY27353
CDY37071
CDY41014
CDY50005
CDY50468
CDY50472
CDY50473
CDY52429
CDY60738
CDY65997
CDY67089
CDY69405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19480.1	CDX93551	AT1G08580.1	21798944
AT2G19480.1	CDX95048	AT1G08580.1	21798944
AT2G19480.1	CDY06320	AT1G08580.1	21798944
AT2G19480.1	CDY22675	AT1G08580.1	21798944
AT2G19480.1	CDX83788	AT1G19050.1	18642946
AT2G19480.1	CDX96681	AT1G19050.1	18642946
AT2G19480.1	CDY26701	AT1G19050.1	18642946
AT2G19480.1	CDY41014	AT1G19050.1	18642946
AT2G19480.1	CDX82688	AT2G19480.1	19228338
AT2G19480.1	CDY21663	AT2G19480.1	19228338
AT2G19480.1	CDY60738	AT2G19480.1	19228338
AT2G19480.1	CDY67089	AT2G19480.1	19228338
AT2G19480.1	CDY69405	AT2G19480.1	19228338
AT2G19480.1	CDX74770	AT2G45860.1	21798944
AT2G19480.1	CDY18894	AT2G45860.1	21798944
AT2G19480.1	CDY27353	AT2G45860.1	21798944
AT2G19480.1	CDY37071	AT2G45860.1	21798944
AT2G19480.1	CDX89363	AT4G26110.1	19228338
AT2G19480.1	CDX94372	AT4G26110.1	19228338
AT2G19480.1	CDY50005	AT4G26110.1	19228338
AT2G19480.1	CDY52429	AT4G26110.1	19228338
AT2G19480.1	CDY65997	AT4G26110.1	19228338
AT2G19480.1	CDY50468	AT5G56950.1	19228338
AT2G19480.1	CDY50472	AT5G56950.1	19228338
AT2G19480.1	CDY50473	AT5G56950.1	19228338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60738	Canola	nucleus	96.84	96.34
CDY69405	Canola	nucleus	90.0	91.94
CDY67089	Canola	nucleus	90.53	91.73
CDY21663	Canola	nucleus	81.32	88.54
AT2G19480.1	Thale cress	nucleus	87.63	87.86
CDY50468	Canola	nucleus	74.74	75.13
VIT_09s0002g02330.t01	Wine grape	nucleus	74.21	74.02
CDY50472	Canola	nucleus	71.84	72.99
CDX89363	Canola	nucleus	69.21	71.86
CDX94372	Canola	nucleus	68.95	71.39
VIT_11s0016g02050.t01	Wine grape	nucleus	72.37	71.24
CDY50473	Canola	nucleus	35.0	70.74
CDY50005	Canola	nucleus	63.95	69.23
CDY65997	Canola	nucleus	14.74	65.88
CDX97517	Canola	nucleus	41.84	57.61
CDY23642	Canola	nucleus	43.68	56.46
HORVU1Hr1G018340.1	Barley	cytosol	3.16	41.38
CDY52429	Canola	nucleus	29.74	38.18
CDX96698	Canola	cytosol	20.53	30.83
CDX83813	Canola	cytosol	20.53	30.83
CDY19242	Canola	cytosol	19.74	28.96
CDY26724	Canola	cytosol	17.89	26.88

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	GO:A0A078D609	EnsemblPlants:CDX82688	ProteinID:CDX82688	ProteinID:CDX82688.1
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00137945001	InterPro:NAP-like_sf	InterPro:NAP_family
PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	SUPFAM:SSF143113	UniParc:UPI0004EEFB4D	SEG:seg

Description

BnaC07g01780D

Coordinates

chrLK031829:+:1248041..1251000

Molecular Weight (calculated)

43629.9 Da

IEP (calculated)

4.081

GRAVY (calculated)

-1.074

Length

380 amino acids

Sequence
(BLAST)

001: MSNDKDNLNM SGLTAALNEE DRAGLVNALK DKLQNLAGQH SDVLENLTPA VRKRVEVLRE IQNQHDEIEA KFFEERAALE AKYQTLYQPF YTKRCEIVTG
101: VVEVEGLPEE VKTEQGADKA AQEKGVPDFW LIALKNNEIT TEEITERDEG ALKYLKDIKW NRVEEPKGFK LEFFFDENPY FKNTVLTKTY HMIDEDEPIL
201: EKAIGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPEDEDDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVD
301: PDDLEIDEDD DDEIDEDDDE DDEEDDEDED DDVDEEDDED EEAELGKRRR KKSSAGHKKS GRSQLAEGQQ GERPAECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.1 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.