Factsheet for PGSC0003DMT400021185

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g063000.2.1	Tomato	nucleus	85.63	79.55
PGSC0003DMT400006378	Potato	nucleus	41.59	54.18
PGSC0003DMT400000751	Potato	nucleus	60.24	53.24
CDX97517	Canola	nucleus	43.12	51.09
PGSC0003DMT400055114	Potato	nucleus	58.41	51.07
KRH23302	Soybean	nucleus	51.99	51.05
VIT_11s0016g02050.t01	Wine grape	nucleus	60.24	51.04
Bra027399.1-P	Field mustard	nucleus	42.81	50.72
VIT_09s0002g02330.t01	Wine grape	nucleus	59.02	50.66
KRH10020	Soybean	nucleus	55.66	49.73
CDY23642	Canola	nucleus	44.65	49.66
PGSC0003DMT400012517	Potato	nucleus	52.29	49.0
AT3G13782.2	Thale cress	cytosol	46.18	47.63
PGSC0003DMT400017852	Potato	cytosol	20.18	25.88
PGSC0003DMT400056432	Potato	cytosol	16.21	25.36
PGSC0003DMT400083149	Potato	cytosol	20.18	25.29
PGSC0003DMT400050243	Potato	nucleus	15.6	17.96
PGSC0003DMT400037682	Potato	nucleus	13.46	15.49

Protein Annotations

MapMan:12.2.6	Gene3D:3.30.1120.90	ncoils:Coil	GO:GO:0000724	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006334	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0042393	GO:GO:0046686	UniProt:M1AER6
InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956	EnsemblPlantsGene:PGSC0003DMG401008204	PGSC:PGSC0003DMG401008204	EnsemblPlants:PGSC0003DMT400021185
PANTHER:PTHR11875	PANTHER:PTHR11875:SF98	SUPFAM:SSF143113	UniParc:UPI0002963BA9	SEG:seg	:

Description

Nucleosome assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG401008204]

Coordinates

chr8:+:35474555..35476594

Molecular Weight (calculated)

38302.7 Da

IEP (calculated)

4.228

GRAVY (calculated)

-0.783

Length

327 amino acids

Sequence
(BLAST)

001: MPSRFLLEPK VISDLDSFLN FNVWLNMLQN KLHDLTRDHS GFLDKLPKNI RMRVDVLREI QSQYNELEAQ FLEEKAALEA KFHKLYEPLY NKRYEIVNGV
101: VEAGDEGTVE EKTNELAGVK GIPHFWLLAM KNNEIIAKEI TEKDEDALQY LKDVKWNRLD DAKGFKLEFF FDTNPYFNSN VLTKTYHMIS EDEHILENAI
201: GTEIEWFPGK CLTQKILKKK PKKGSNDTKP IIKTEECESF FHFFDPPQLP EELDEETAEL LQGQMEQDYE IGSTIREKII PHAVSWFTGE AVPIDDDDDE
301: EEEDYVEEND EEEDDEKGDE ENIKENH

Best Arabidopsis Sequence Match ( AT2G19480.1 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KSSAGHKKAG RSQLAEGQAG ERPPECKQQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.