Factsheet for PGSC0003DMT400037682

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056432	Potato	cytosol	49.3	66.99
Solyc02g021350.2.1	Tomato	cytosol	54.58	48.74
PGSC0003DMT400083149	Potato	cytosol	35.92	39.08
PGSC0003DMT400017852	Potato	cytosol	33.1	36.86
PGSC0003DMT400050243	Potato	nucleus	33.45	33.45
PGSC0003DMT400006378	Potato	nucleus	15.85	17.93
PGSC0003DMT400055114	Potato	nucleus	21.48	16.31
PGSC0003DMT400000751	Potato	nucleus	21.13	16.22
PGSC0003DMT400012517	Potato	nucleus	17.61	14.33
PGSC0003DMT400021185	Potato	nucleus	15.49	13.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400037682	EnsemblPlantsGene:PGSC0003DMG400014535	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF60	PFAM:PF00956	PGSC:PGSC0003DMG400014535
SEG:seg	SUPFAM:SSF143113	UniParc:UPI00029566FB	UniProt:M1B5P5	MapMan:12.2.8	:

Description

Set [Source:PGSC_GENE;Acc:PGSC0003DMG400014535]

Coordinates

chr2:-:6283940..6287898

Molecular Weight (calculated)

33679.2 Da

IEP (calculated)

9.720

GRAVY (calculated)

-0.827

Length

284 amino acids

Sequence
(BLAST)

001: MEHMKLITVA RADLNKVQHK LEKINKEARG ELLKVGQKYN RIRQLVYEKR TNVIKDILGF WSTAFLKHHV LDELVCIEED RKIFEFLSSI KVELSRDVKS
101: GYTIIFNFDS NEYFENTKLW KKYERTKTSA SPIQWAQGNG VDEQSFFKRF SEVDKRDEIG EMIKDELWSD PLICFHHEAD VENVAVKMRF EEVKKDQDKV
201: QVQERSRSRP PDSRSSSKPL DSTRSQDQDK VQFKNDQDQD RQIQDQAQSP WIQLEVKIKI KFSSRTIKIK TARFKIKLKA LEFN

Best Arabidopsis Sequence Match ( AT1G74560.1 )
(BLAST)

001: MVADKSKKSK IEEKGEEENL EQIDAELVLS IEKLQEIQDD LEKINEKASD EVLEVEQKYN VIRKPVYDKR NEVIQSIPGF WMTAFLSHPA LGDLLTEEDQ
101: KIFKYLNSLE VEDAKDVKSG YSITFHFTSN PFFEDAKLTK TFTFLEEGTT KITATPIKWK EGKGLPNGVN HDDKKGNKRA LPEESFFTWF TDAQHKEDAG
201: DEIHDEVADI IKEDLWSNPL TYFNNDADEE DFDGDDDGDE EGEEDDDDEE EEDGEE

Arabidopsis Description

NRP1NAP1-related protein 1 [Source:TAIR;Acc:AT1G74560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.