Factsheet for VIT_17s0000g06030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g04140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18800.1	VIT_18s0001g04140.t01	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g077660.1.1	Tomato	cytosol	19.03	80.95
KRH16731	Soybean	cytosol, mitochondrion, nucleus	25.37	78.16
KRH63352	Soybean	nucleus	75.37	77.1
KRH54545	Soybean	nucleus	75.75	76.89
VIT_14s0108g00510.t01	Wine grape	cytosol	69.78	76.02
CDX83813	Canola	cytosol	69.4	73.52
CDX96698	Canola	cytosol	68.66	72.73
AT1G18800.1	Thale cress	cytosol	69.4	72.66
Bra016541.1-P	Field mustard	cytosol	63.06	72.22
KRH65521	Soybean	cytosol	26.49	71.0
KRH03467	Soybean	nucleus	67.54	70.16
KRH56918	Soybean	nucleus	66.42	69.53
KRH65520	Soybean	nucleus	27.24	66.36
KRH75776	Soybean	cytosol	23.51	66.32
Solyc06g069890.2.1	Tomato	nucleus	64.55	66.28
CDY26724	Canola	cytosol	61.94	65.61
PGSC0003DMT400083149	Potato	cytosol	63.81	65.52
Solyc12g077670.1.1	Tomato	cytosol	22.39	65.22
Solyc03g116170.2.1	Tomato	cytosol	61.19	64.82
AT1G74560.3	Thale cress	cytosol	61.94	62.88
CDY19242	Canola	cytosol	60.07	62.16
Bra025687.1-P	Field mustard	cytosol	53.36	61.37
PGSC0003DMT400050243	Potato	nucleus	54.1	51.06
KRH49525	Soybean	cytosol	30.22	49.39
VIT_11s0016g02050.t01	Wine grape	nucleus	30.97	21.5
VIT_09s0002g02330.t01	Wine grape	nucleus	28.73	20.21

Protein Annotations

EntrezGene:100244926	wikigene:100244926	MapMan:12.2.8	Gene3D:3.30.1120.90	EMBL:AM425900	ProteinID:CAN60194
ProteinID:CAN60194.1	ProteinID:CBI15238	ProteinID:CBI15238.3	ncoils:Coil	UniProt:D7SIC8	EMBL:FN594950
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100244926	wikigene:LOC100244926	InterPro:NAP-like_sf	InterPro:NAP_family
PFAM:PF00956	PANTHER:PTHR11875	PANTHER:PTHR11875:SF60	SUPFAM:SSF143113	TIGR:TC52689	UniParc:UPI000198514D
ArrayExpress:VIT_17s0000g06030	EnsemblPlantsGene:VIT_17s0000g06030	EnsemblPlants:VIT_17s0000g06030.t01	unigene:Vvi.6751	RefSeq:XP_002275632	RefSeq:XP_002275632.1
RefSeq:XP_010663381.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:6601253..6607379

Molecular Weight (calculated)

30803.8 Da

IEP (calculated)

3.895

GRAVY (calculated)

-1.016

Length

268 amino acids

Sequence
(BLAST)

001: MVADKGKKLK QSEKEEEVNS DHIDGDLVLS IEKLQEIQDD LEKINEEASD KVLEVEQKYN EIRKPIYDKR NDIIKSIPDF WLTAFLSHPA LGDLLSEEDQ
101: KIFKYLSSLE VEDFKDVKSG YSITFNFNPN PFFEDTKLKK TFTFLDEGIT KISVTSIKWK DGMGIPNGVN HEKKGNKRPI ADASFFSWFS ETQQKDIMDD
201: IHDEIAEIIK EDLWPNPLTY FNSEADEEDF DGEDADEEGK GGDGSEEDDD DQEDDDEDDD DDEGDEDD

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.