Factsheet for Bra040674.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002778.1-P
Bra004943.1-P
Bra006957.1-P
Bra013951.1-P
Bra016526.1-P
Bra018613.1-P
Bra025708.1-P
Bra031083.1-P
Bra031633.1-P
Bra036720.1-P
Bra039308.1-P
Bra040674.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19480.1	Bra018613.1-P	AT1G08580.1	21798944
AT2G19480.1	Bra031633.1-P	AT1G08580.1	21798944
AT2G19480.1	Bra016526.1-P	AT1G19050.1	18642946
AT2G19480.1	Bra025708.1-P	AT1G19050.1	18642946
AT2G19480.1	Bra006957.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra031083.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra036720.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra040674.1-P	AT2G19480.1	19228338
AT2G19480.1	Bra004943.1-P	AT2G45860.1	21798944
AT2G19480.1	Bra039308.1-P	AT2G45860.1	21798944
AT2G19480.1	Bra013951.1-P	AT4G26110.1	19228338
AT2G19480.1	Bra002778.1-P	AT5G56950.1	19228338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60738	Canola	nucleus	99.73	98.17
Bra036720.1-P	Field mustard	nucleus	90.43	92.14
AT2G19480.1	Thale cress	nucleus	86.97	86.28
Bra031083.1-P	Field mustard	nucleus	81.91	81.27
VIT_09s0002g02330.t01	Wine grape	nucleus	74.73	73.75
VIT_11s0016g02050.t01	Wine grape	nucleus	74.47	72.54
Bra013951.1-P	Field mustard	nucleus	68.88	70.77
Bra006957.1-P	Field mustard	nucleus	42.29	70.04
Bra002778.1-P	Field mustard	nucleus	66.76	60.48
Bra027399.1-P	Field mustard	nucleus	42.29	57.61
HORVU1Hr1G018340.1	Barley	cytosol	3.46	44.83
Bra016541.1-P	Field mustard	cytosol	20.21	32.48
Bra025687.1-P	Field mustard	cytosol	13.83	22.32

Protein Annotations

EnsemblPlants:Bra040674.1	EnsemblPlants:Bra040674.1-P	EnsemblPlantsGene:Bra040674	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
InterPro:NAP-like_sf	InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF101	PFAM:PF00956
SEG:seg	SUPFAM:SSF143113	UniParc:UPI000253E767	UniProt:M4FHU5	MapMan:12.2.6	:

Description

AT2G19480 (E=3e-128) NFA02, NFA2, NAP1;2 | NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN 1;2); DNA binding

Coordinates

chrScaffold000232:+:14998..17506

Molecular Weight (calculated)

43293.4 Da

IEP (calculated)

4.047

GRAVY (calculated)

-1.093

Length

376 amino acids

Sequence
(BLAST)

001: MSNDKDNLNM SALTAALNEE DRAGLVNALK DKLQNLAGQH SDVLENLTPA VRKRVEVLRE IQNQHDEIEA KFFEERAALE AKYQKLYQPF YTKRCEIVTG
101: VVEVEGLPEE VKTEQGADKA AQEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW NRVEEPKGFK LEFFFDENPY FKNTVLTKTY HMIDEDEPIL
201: EKAIGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPEDEADL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVD
301: PDDLEMDEDD DDEIDEDDEE DEDDDEDDDE DEDDDDEEDD EDEEAELGKR RRKKKSGRSQ VAEGQQGERP AECKQQ

Best Arabidopsis Sequence Match ( AT2G19480.3 )
(BLAST)

001: MSNDKDSMNM SDLSTALNEE DRAGLVNALK NKLQNLAGQH SDVLENLTPP VRKRVEFLRE IQNQYDEMEA KFFEERAALE AKYQKLYQPL YTKRYEIVNG
101: VVEVEGAAEE VKSEQGEDKS AEEKGVPDFW LIALKNNEIT AEEITERDEG ALKYLKDIKW SRVEEPKGFK LEFFFDQNPY FKNTVLTKTY HMIDEDEPIL
201: EKALGTEIEW YPGKCLTQKI LKKKPKKGSK NTKPITKTED CESFFNFFSP PQVPDDDEDL DDDMADELQG QMEHDYDIGS TIKEKIISHA VSWFTGEAVE
301: ADDLDIEDDD DEIDEDDDEE DEEDDEDDEE EDDEDDDEEE EADQGKKSKK KAGRSQLAEG QAGERPPECK QQ

Arabidopsis Description

NAP1;2Nucleosome assembly protein 1;2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.