Factsheet for Zm00001d016935_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d047863_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18800.1	Zm00001d047863_P004	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07035	Sorghum	cytosol	90.7	93.23
Zm00001d050874_P001	Maize	extracellular	90.31	92.83
TraesCS6D01G185800.1	Wheat	golgi	81.01	83.27
TraesCS6B01G227700.1	Wheat	nucleus	81.01	83.27
TraesCS6A01G202200.1	Wheat	nucleus	81.01	83.27
HORVU6Hr1G051930.1	Barley	nucleus	80.62	82.21
Os02t0576700-01	Rice	extracellular	77.91	79.76
KRH16731	Soybean	cytosol, mitochondrion, nucleus	22.48	66.67
VIT_14s0108g00510.t01	Wine grape	cytosol	63.18	66.26
GSMUA_Achr10P...	Banana	nucleus	65.12	65.37
GSMUA_Achr4P00490_001	Banana	cytosol	64.34	64.84
CDX83813	Canola	cytosol	62.79	64.03
CDX96698	Canola	cytosol	62.4	63.64
GSMUA_Achr7P21000_001	Banana	cytosol	62.02	63.49
AT1G18800.1	Thale cress	cytosol	62.4	62.89
GSMUA_Achr6P10690_001	Banana	nucleus	62.02	62.75
Bra016541.1-P	Field mustard	cytosol	56.2	61.97
Solyc02g067370.2.1	Tomato	nucleus	60.85	61.81
PGSC0003DMT400017852	Potato	cytosol	60.47	61.18
KRH63352	Soybean	nucleus	61.24	60.31
KRH65521	Soybean	cytosol	23.26	60.0
KRH54545	Soybean	nucleus	61.24	59.85
KRH03467	Soybean	nucleus	57.75	57.75
KRH56918	Soybean	nucleus	56.2	56.64
KRH65520	Soybean	nucleus	24.03	56.36
CDY26724	Canola	cytosol	54.65	55.73
KRH75776	Soybean	cytosol	19.77	53.68
CDY19242	Canola	cytosol	53.49	53.28
Bra025687.1-P	Field mustard	cytosol	47.67	52.79
AT1G74560.3	Thale cress	cytosol	53.1	51.89
KRH49525	Soybean	cytosol	24.81	39.02
Zm00001d045352_P002	Maize	extracellular, mitochondrion	28.68	19.47
Zm00001d038851_P001	Maize	extracellular, mitochondrion	27.52	19.19
Zm00001d036177_P001	Maize	nucleus	26.74	18.8
Zm00001d011130_P002	Maize	nucleus	22.48	13.71

Protein Annotations

MapMan:12.2.8	Gene3D:3.30.1120.90	EntrezGene:542654	EMBL:AF384036	ProteinID:AQK71997.1	EMBL:BT039153
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006334
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf	InterPro:NAP_family	PFAM:PF00956
PANTHER:PTHR11875	PANTHER:PTHR11875:SF68	UniProt:Q94F78	SUPFAM:SSF143113	UniParc:UPI00000A98E8	EnsemblPlantsGene:Zm00001d016935
EnsemblPlants:Zm00001d016935_P001	EnsemblPlants:Zm00001d016935_T001	SEG:seg	:	:	:

Description

nucleosome/chromatin assembly factor A104 nucleosome/chromatin assembly factor A104

Coordinates

chr5:+:180421151..180425188

Molecular Weight (calculated)

29333.2 Da

IEP (calculated)

3.852

GRAVY (calculated)

-0.904

Length

258 amino acids

Sequence
(BLAST)

001: MTAPADKGKK AKTDADGGEE NEQIDGALVF SIEKLQEIQD ELEKVNEEAS DKVMEVEQKY SEIRRPVYLK RGDIIKTIPD FWLTAFLSHP LLSELLTEED
101: QKIFKYLDSI DVDDSDVKAG YSIYLNFSEN PYFEDTKLTK TYSFVDDGTT TIKASQIKWK DGMGPANGNG INKKGNKRPL VVESFFSWFS DTELKSLADG
201: VQDEVAEIIK EDLWPNPLKY FNNEVEDEFE GDEEDDDDDD DDDNLDGDDN DDDGDQEN

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.