Factsheet for Solyc02g067370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017852	Potato	cytosol	94.49	94.12
VIT_14s0108g00510.t01	Wine grape	cytosol	68.5	70.73
GSMUA_Achr10P...	Banana	nucleus	69.29	68.48
GSMUA_Achr6P10690_001	Banana	nucleus	66.14	65.88
GSMUA_Achr4P00490_001	Banana	cytosol	65.75	65.23
EES07035	Sorghum	cytosol	61.42	62.15
GSMUA_Achr7P21000_001	Banana	cytosol	61.42	61.9
Zm00001d050874_P001	Maize	extracellular	60.63	61.35
Zm00001d016935_P001	Maize	extracellular	61.81	60.85
TraesCS6B01G227700.1	Wheat	nucleus	59.84	60.56
Solyc12g077660.1.1	Tomato	cytosol	14.96	60.32
TraesCS6D01G185800.1	Wheat	golgi	59.45	60.16
TraesCS6A01G202200.1	Wheat	nucleus	59.45	60.16
Solyc06g069890.2.1	Tomato	nucleus	61.81	60.15
HORVU6Hr1G051930.1	Barley	nucleus	59.84	60.08
Os02t0576700-01	Rice	extracellular	59.45	59.92
Solyc12g077670.1.1	Tomato	cytosol	20.87	57.61
Solyc03g116170.2.1	Tomato	cytosol	56.69	56.92
TraesCS2B01G342400.1	Wheat	cytosol	54.33	54.55
TraesCS2A01G344900.1	Wheat	cytosol	53.94	54.15
TraesCS2D01G323500.1	Wheat	cytosol	53.94	54.15
Os04t0459700-02	Rice	nucleus	55.12	54.05
EES12291	Sorghum	cytosol	51.57	50.97
Solyc02g021350.2.1	Tomato	cytosol	41.73	33.33
Solyc05g018810.2.1	Tomato	nucleus	31.89	21.54
Solyc12g008940.1.1	Tomato	nucleus	31.1	21.12
Solyc03g121700.2.1	Tomato	nucleus	27.95	19.09
Solyc06g062690.2.1	Tomato	nucleus	25.98	18.91
Solyc08g063000.2.1	Tomato	nucleus	25.2	18.18

Protein Annotations

EnsemblPlants:Solyc02g067370.2.1	EnsemblPlantsGene:Solyc02g067370.2	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF60	PFAM:PF00956	SEG:seg
SUPFAM:SSF143113	UniParc:UPI00027691CF	UniProt:K4B769	MapMan:12.2.8	:	:

Description

No Description!

Coordinates

chr2:-:37565540..37572936

Molecular Weight (calculated)

28955.7 Da

IEP (calculated)

3.808

GRAVY (calculated)

-0.888

Length

254 amino acids

Sequence
(BLAST)

001: MVTDNSKKVK TAVEENAQQI GTGVGSSIEK LQEVQDELEK VNEQASEEVL EIEQKYNEIR RPVYEKRNEL IKSIPDFWVT AFLSHPALGE LLNVEDQKIF
101: KYLDSLDVED FKDVTSGYSL TFVFKPNPYF EDTKLVKTYT FLDEGSTKIT GTAIKWKEGM GAAYGVNPEM KGNKRPASED SFFSWFSETQ LKDIADGLSD
201: EVGEIIKEDL WPNPLKYFNN EADEEDFDGD DDDDDDDDDE EDNDDDDVDD EDDG

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.