Factsheet for TraesCS2B01G342400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G088300.1
TraesCS4B01G215900.1
TraesCS4D01G216400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18800.1	TraesCS4A01G088300.1	AT5G09320.1	21798944
AT1G18800.1	TraesCS4B01G215900.1	AT5G09320.1	21798944
AT1G18800.1	TraesCS4D01G216400.1	AT5G09320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G323500.1	Wheat	cytosol	98.42	98.42
TraesCS2A01G344900.1	Wheat	cytosol	96.84	96.84
Os04t0459700-02	Rice	nucleus	74.7	72.97
EES12291	Sorghum	cytosol	70.75	69.65
TraesCS6B01G227700.1	Wheat	nucleus	64.82	65.34
KRH16731	Soybean	cytosol, mitochondrion, nucleus	21.74	63.22
GSMUA_Achr10P...	Banana	nucleus	63.64	62.65
GSMUA_Achr4P00490_001	Banana	cytosol	62.85	62.11
GSMUA_Achr7P21000_001	Banana	cytosol	61.66	61.9
GSMUA_Achr6P10690_001	Banana	nucleus	61.66	61.18
AT1G18800.1	Thale cress	cytosol	60.08	59.38
CDX83813	Canola	cytosol	58.5	58.5
CDX96698	Canola	cytosol	58.1	58.1
VIT_14s0108g00510.t01	Wine grape	cytosol	55.73	57.32
Bra016541.1-P	Field mustard	cytosol	52.17	56.41
KRH63352	Soybean	nucleus	57.31	55.34
KRH54545	Soybean	nucleus	57.71	55.3
Solyc02g067370.2.1	Tomato	nucleus	54.55	54.33
KRH56918	Soybean	nucleus	54.55	53.91
KRH03467	Soybean	nucleus	54.55	53.49
PGSC0003DMT400017852	Potato	cytosol	53.75	53.33
KRH65521	Soybean	cytosol	20.95	53.0
CDY26724	Canola	cytosol	52.57	52.57
CDY19242	Canola	cytosol	50.99	49.81
KRH75776	Soybean	cytosol	18.18	48.42
AT1G74560.3	Thale cress	cytosol	49.8	47.73
KRH65520	Soybean	nucleus	20.55	47.27
Bra025687.1-P	Field mustard	cytosol	42.69	46.35
KRH49525	Soybean	cytosol	23.72	36.59
TraesCS1B01G377000.1	Wheat	nucleus	26.48	18.66

Protein Annotations

EnsemblPlants:TraesCS2B01G342400.1	EnsemblPlantsGene:TraesCS2B01G342400	Gene3D:3.30.1120.90	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006334	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:NAP-like_sf
InterPro:NAP_family	ncoils:Coil	PANTHER:PTHR11875	PANTHER:PTHR11875:SF68	PFAM:PF00956	SEG:seg
SUPFAM:SSF143113	MapMan:12.2.8	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:488198773..488204597

Molecular Weight (calculated)

29477.6 Da

IEP (calculated)

3.921

GRAVY (calculated)

-0.921

Length

253 amino acids

Sequence
(BLAST)

001: MATAEQKGKR PRIEAEEGDR IDDGLLLSIE KLQEIQDEIE RVNEEASDKV LEVEQKYNEV RRPVYTRRNE IIKEIPDFWL TAFLSHPMLG ELLTEDDQKI
101: FKHLVSIDVN EFQDIKSGYS ITLAFSSNPY FEDTKLTKTC SFSDDGKITV KATTINWKDG MDIANGKAYM ENGEKRLLID ESFFTWFNDA KNKSFSDGVM
201: DEVADVIKEE LWPNPLKYFN NEAEDEFEDD KDEEGFDEDD DDEDEEEEED DEE

Best Arabidopsis Sequence Match ( AT1G18800.1 )
(BLAST)

001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE

Arabidopsis Description

NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.