Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr8P18180_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G18800.1 | GSMUA_Achr8P18180_001 | AT5G09320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 88.24 | 87.55 |
| GSMUA_Achr4P00490_001 | Banana | cytosol | 75.29 | 75.0 |
| VIT_14s0108g00510.t01 | Wine grape | cytosol | 70.98 | 73.58 |
| GSMUA_Achr7P21000_001 | Banana | cytosol | 70.2 | 71.03 |
| KRH65521 | Soybean | cytosol | 26.67 | 68.0 |
| KRH16731 | Soybean | cytosol, mitochondrion, nucleus | 23.14 | 67.82 |
| PGSC0003DMT400017852 | Potato | cytosol | 66.27 | 66.27 |
| Solyc02g067370.2.1 | Tomato | nucleus | 65.88 | 66.14 |
| Os02t0576700-01 | Rice | extracellular | 65.1 | 65.87 |
| CDX83813 | Canola | cytosol | 65.1 | 65.61 |
| TraesCS6B01G227700.1 | Wheat | nucleus | 64.31 | 65.34 |
| CDX96698 | Canola | cytosol | 64.71 | 65.22 |
| TraesCS6D01G185800.1 | Wheat | golgi | 63.92 | 64.94 |
| TraesCS6A01G202200.1 | Wheat | nucleus | 63.92 | 64.94 |
| HORVU6Hr1G051930.1 | Barley | nucleus | 64.31 | 64.82 |
| Bra016541.1-P | Field mustard | cytosol | 59.22 | 64.53 |
| AT1G18800.1 | Thale cress | cytosol | 64.71 | 64.45 |
| KRH75776 | Soybean | cytosol | 23.92 | 64.21 |
| EES07035 | Sorghum | cytosol | 63.14 | 64.14 |
| Zm00001d050874_P001 | Maize | extracellular | 62.75 | 63.74 |
| KRH63352 | Soybean | nucleus | 65.1 | 63.36 |
| KRH54545 | Soybean | nucleus | 65.1 | 62.88 |
| Zm00001d016935_P001 | Maize | extracellular | 62.75 | 62.02 |
| KRH65520 | Soybean | nucleus | 26.67 | 61.82 |
| TraesCS2B01G342400.1 | Wheat | cytosol | 61.18 | 61.66 |
| TraesCS2D01G323500.1 | Wheat | cytosol | 61.18 | 61.66 |
| TraesCS2A01G344900.1 | Wheat | cytosol | 60.78 | 61.26 |
| KRH56918 | Soybean | nucleus | 61.18 | 60.94 |
| KRH03467 | Soybean | nucleus | 61.18 | 60.47 |
| CDY26724 | Canola | cytosol | 57.65 | 58.1 |
| AT1G74560.3 | Thale cress | cytosol | 58.43 | 56.44 |
| EES12291 | Sorghum | cytosol | 56.86 | 56.42 |
| Os04t0459700-02 | Rice | nucleus | 56.86 | 55.98 |
| Bra025687.1-P | Field mustard | cytosol | 50.2 | 54.94 |
| CDY19242 | Canola | cytosol | 55.69 | 54.83 |
| KRH49525 | Soybean | cytosol | 29.02 | 45.12 |
| GSMUA_Achr7P09020_001 | Banana | nucleus | 30.98 | 21.29 |
| GSMUA_Achr6P00890_001 | Banana | nucleus | 29.41 | 20.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.45 | 19.83 |
| GSMUA_Achr2P16760_001 | Banana | mitochondrion, nucleus | 28.63 | 17.98 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 29.02 | 17.41 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P10690_001 | EnsemblPlants:GSMUA_Achr6T10690_001 | EnsemblPlantsGene:GSMUA_Achr6G10690_001 | Gene3D:3.30.1120.90 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006334 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| InterPro:NAP-like_sf | InterPro:NAP_family | ncoils:Coil | PANTHER:PTHR11875 | PANTHER:PTHR11875:SF60 | PFAM:PF00956 |
| SEG:seg | SUPFAM:SSF143113 | UniParc:UPI0002948D5A | UniProt:M0T5W8 | MapMan:12.2.8 | : |
Description
SET, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G10690_001]
Coordinates
chr6:-:7113094..7116796
Molecular Weight (calculated)
29093.1 Da
IEP (calculated)
3.941
GRAVY (calculated)
-0.831
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MVADKAKKTK VEDEAPDHID GELVLSIEKL QEIQDEIETV NEEASEKVLE VEQKYNEIRR PIYKRRTETI QSIPDFWLTA FLSHPVLGDL LNEEDQKIFK
101: YLVSLDVEDS KDVKSGYSIT FNFSPNPYFE DTCLTKTYSF FDEGTTNITG TTIKWKEGMN VANGVVHKKE GGKRPLLEES FFAWFSEAQQ KNLSEGLSDE
201: MAEIIKEDFW PNPLKYFNNE ADEEDFGGDE YDDEGTDLDG EDESGGDEDG EGDDS
101: YLVSLDVEDS KDVKSGYSIT FNFSPNPYFE DTCLTKTYSF FDEGTTNITG TTIKWKEGMN VANGVVHKKE GGKRPLLEES FFAWFSEAQQ KNLSEGLSDE
201: MAEIIKEDFW PNPLKYFNNE ADEEDFGGDE YDDEGTDLDG EDESGGDEDG EGDDS
001: MVTDKSKKAK TEEENVEQID AELVLSIEKL QEIQDDLEKI NEKASDEVLE VEQKYNVIRK PVYDKRNEII KTIPDFWLTA FLSHPALGEL LTEEDQKIFK
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
101: YLSSLDVEDA KDVKSGYSIT FSFNPNPFFE DGKLTKTFTF LEEGTTKITA TPIKWKEGKG LANGVNHEKN GNKRALPEES FFTWFSDAQH KEDVEDEMQD
201: EQVADIIKED LWPNPLTYFN NDADEEDFDG DDDGDEEEKE GDSDEDDDEE DEVGEE
Arabidopsis Description
NRP2NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.