Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0182500-00 | |
| Os02t0708400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09320.1 | Os02t0708400-01 | AT3G27960.1 | 21798944 |
| AT5G09320.1 | Os01t0182500-00 | AT5G64780.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G088300.1 | Wheat | cytosol | 77.71 | 79.03 |
| TraesCS4D01G216400.1 | Wheat | cytosol | 76.88 | 77.68 |
| HORVU4Hr1G061320.1 | Barley | cytosol | 77.71 | 77.23 |
| TraesCS4B01G215900.1 | Wheat | cytosol | 76.04 | 76.52 |
| OQU92877 | Sorghum | cytosol | 74.79 | 76.38 |
| Zm00001d047863_P004 | Maize | cytosol | 74.38 | 70.41 |
| GSMUA_Achr8P18180_001 | Banana | cytosol | 59.58 | 68.75 |
| CDY51691 | Canola | cytosol | 49.38 | 59.4 |
| VIT_18s0001g04140.t01 | Wine grape | cytosol | 56.04 | 58.1 |
| Bra022450.1-P | Field mustard | cytosol | 55.0 | 56.77 |
| CDY24616 | Canola | cytosol | 54.58 | 56.22 |
| AT5G09320.1 | Thale cress | cytosol | 49.58 | 54.46 |
| KRH53154 | Soybean | cytosol | 52.5 | 53.96 |
| KRH64753 | Soybean | cytosol | 52.08 | 53.76 |
| Solyc01g096990.2.1 | Tomato | cytosol | 52.29 | 51.75 |
| Bra009378.1-P | Field mustard | cytosol | 54.17 | 50.78 |
| PGSC0003DMT400070782 | Potato | cytosol | 53.12 | 50.7 |
| AT3G19770.1 | Thale cress | cytosol | 53.75 | 49.62 |
| Os03t0842700-03 | Rice | cytosol | 13.96 | 46.21 |
| CDY21574 | Canola | cytosol | 49.58 | 37.3 |
| CDX69912 | Canola | cytosol | 54.38 | 36.61 |
Protein Annotations
| Gene3D:1.10.246.120 | Gene3D:1.20.1050.80 | MapMan:22.8.3.1 | EntrezGene:4332330 | ProteinID:ABF95105.1 | ProteinID:BAS83374.1 |
| ProteinID:EEE58741.1 | InterPro:IPR003123 | InterPro:IPR037191 | EnsemblPlantsGene:Os03g0262900 | EnsemblPlants:Os03t0262900-02 | PFAM:PF02204 |
| PFscan:PS51205 | PANTHER:PTHR23101 | PANTHER:PTHR23101:SF63 | UniProt:Q10NQ3 | SMART:SM00167 | SUPFAM:SSF109993 |
| UniParc:UPI0000DB419E | InterPro:VPS9 | InterPro:VPS9_dom_sf | RefSeq:XP_015632668.1 | SEG:seg | : |
Description
GLUTELIN PRECURSOR ACCUMULATION2, glutelin precursor accumulation 2, Vacuolar sorting protein9 domain-containing protein, GLUTELIN PRECURSOR 6Hypothetical conserved gene. (Os03t0262900-01);Activator of Rab5 GTPase, Intracellular transport of the proglutelin (Os03t0262900-02)
Coordinates
chr3:+:8629862..8635160
Molecular Weight (calculated)
53843.8 Da
IEP (calculated)
4.394
GRAVY (calculated)
-0.610
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGGGDAF GSATAPLAWH DFLERMRQPS AADFVKSIKG FIVTFSNRAP DPEHDSAAVQ EFLENMEGAF RAHTPWAGSS EEELESAGEG LEKYVMTKLF
101: NRVFASVPED VKSDEELFEK MSLLQQFIRP ENLDIKPEYQ SETSWLLAQK ELQKINMYKA PRDKLACILN CCKVINNLLL NASIVSNENP PGADEFLPVL
201: IYVTIKANPP QLHSNLLYIQ RYRRQSRLVS EAQYFFTNIL SAESFIWNID GESLSMDERD FQKKMDLARE RMLGLSASSE NQDNQNNLDV REQKSQTLKA
301: SRDSDVNLSL KDNFQGPGLE MRRDSDASSN PVERVQSISD LEKKGAAELL KDDDLNKKIQ EYPFLFARSG DLTVADVENL LNSYKQLVLK YVALSQGMGI
401: NLENPPVQSM QTVSDLVESE EPKNVKNAVN FSEGSSKTSD DIKNDTLYSE VDNTGTQQTA VDPSYQKAQQ DEASDQPEHA
101: NRVFASVPED VKSDEELFEK MSLLQQFIRP ENLDIKPEYQ SETSWLLAQK ELQKINMYKA PRDKLACILN CCKVINNLLL NASIVSNENP PGADEFLPVL
201: IYVTIKANPP QLHSNLLYIQ RYRRQSRLVS EAQYFFTNIL SAESFIWNID GESLSMDERD FQKKMDLARE RMLGLSASSE NQDNQNNLDV REQKSQTLKA
301: SRDSDVNLSL KDNFQGPGLE MRRDSDASSN PVERVQSISD LEKKGAAELL KDDDLNKKIQ EYPFLFARSG DLTVADVENL LNSYKQLVLK YVALSQGMGI
401: NLENPPVQSM QTVSDLVESE EPKNVKNAVN FSEGSSKTSD DIKNDTLYSE VDNTGTQQTA VDPSYQKAQQ DEASDQPEHA
001: MENTDVFLGL HDFLERMRKP SAGDFVKSIK SFIVSFSNNA PDPEKDCAMV QEFFSKMEAA FRAHPLWSGC SEEELDSAGD GLEKYVMTKL FTRVFASNTE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
101: EVIADEKLFQ KMSLVQQFIS PENLDIQPTF QNESSWLLAQ KELQKINMYK APRDKLVCIL NCCKVINNLL LNASIASNEN APGADEFLPV LIYVTIKANP
201: PQLHSNLLYI QRYRRESKLV GEAAYFFTNI LSAESFISNI DAKSISLDEA EFEKNMESAR ARISGLDSQT YQTGHGSAPP PRDESTLQKT QSLNPKRENT
301: LFQSKSSDSL SGTNELLNIN SETPMKKAES ISDLENKGAT LLKDTEPSKV FQEYPYIFAS AGDLRIGDVE GLLNSYKQLV FKYVCLTKGL GDGTSLAPSS
401: SPLQASSGFN TSKESEDHRR SSSDVQMTKE TDRSVDDLIR ALHGEGEDVN NLSDVKHEEY GAMLVEGKDE ERDSKVQGEV DAKDIELMKQ IPKREGDNSS
501: SRPAEDEDVG SKQPVTEASE
Arabidopsis Description
VPS9AVPS9A [Source:UniProtKB/TrEMBL;Acc:A0A178VEC6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.