Factsheet for AT5G09320.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009378.1-P	Field mustard	cytosol	77.8	66.41
AT3G19770.1	Thale cress	cytosol	74.14	62.31
GSMUA_Achr8P18180_001	Banana	cytosol	51.49	54.09
VIT_18s0001g04140.t01	Wine grape	cytosol	56.52	53.35
KRH64753	Soybean	cytosol	55.38	52.04
KRH53154	Soybean	cytosol	55.38	51.82
OQU92877	Sorghum	cytosol	53.78	50.0
Os03t0262900-02	Rice	cytosol, plasma membrane	54.46	49.58
TraesCS4B01G215900.1	Wheat	cytosol	53.32	48.85
TraesCS4A01G088300.1	Wheat	cytosol	52.4	48.52
TraesCS4D01G216400.1	Wheat	cytosol	52.4	48.21
HORVU4Hr1G061320.1	Barley	cytosol	53.09	48.03
CDX69912	Canola	cytosol	77.8	47.69
Solyc01g096990.2.1	Tomato	cytosol	51.95	46.8
PGSC0003DMT400070782	Potato	cytosol	52.63	45.73
Zm00001d047863_P004	Maize	cytosol	52.63	45.36
CDY21574	Canola	cytosol	64.76	44.36

Protein Annotations

Gene3D:1.10.246.120	Gene3D:1.20.1050.80	MapMan:22.8.3.1	EntrezGene:830791	UniProt:A0A178UGF7	ProteinID:AED91374.2
ArrayExpress:AT5G09320	EnsemblPlantsGene:AT5G09320	RefSeq:AT5G09320	TAIR:AT5G09320	RefSeq:AT5G09320-TAIR-G	EnsemblPlants:AT5G09320.1
TAIR:AT5G09320.1	UniProt:F4KCK0	InterPro:IPR003123	InterPro:IPR037191	RefSeq:NP_196494.2	ProteinID:OAO91751.1
PFAM:PF02204	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001078
PO:PO:0001081	PO:PO:0004507	PO:PO:0007098	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PFscan:PS51205
PANTHER:PTHR23101	PANTHER:PTHR23101:SF25	SMART:SM00167	SUPFAM:SSF109993	UniParc:UPI0007DF5349	InterPro:VPS9
Symbol:VPS9B	InterPro:VPS9_dom_sf	SEG:seg	:	:	:

Description

VPS9BVacuolar sorting protein 9 (VPS9) domain [Source:TAIR;Acc:AT5G09320]

Coordinates

chr5:-:2890102..2892094

Molecular Weight (calculated)

48779.6 Da

IEP (calculated)

5.186

GRAVY (calculated)

-0.404

Length

437 amino acids

Sequence
(BLAST)

001: MENTDVVSGL HNFLSKPSAK DFIKSIKSFI VSILNTAPDP EKDCDAVQDF FYKMESAFRA HPLWSGCSDD ELDNAGDGLE KYVMTKLFPR VFASNTEDVI
101: SDEKLFQKIS LVQQFISPEN LDIQPTFQNQ TSWLLAQKEL QKINMYNAPR DKLMCILRCC KVINNLLLNA SIASNQNEPG ADQFLPVLIY VTIKANPPQF
201: HSNLLYIQRY RRQSKLVGEA GYLFTNILSA ESFISNIDAK SLSMDEADFE TKMKSAHARL SGPGSQSYQT DHGAALPTAH NTKRENMLLH TKSTDSFSGT
301: NETLSETPIK KADPITDLEN KGAATLLNDR SEATKIFQEY PYMFASVGDL KIGDVEDLLN NYKQLVFKYV CLSKGLGDAT SLTPCISPLQ ASKVSENHTT
401: LSSDFQTKSE TDRSVDNLFR ALQGEGDNVH NISDVKQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.