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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 4
  • cytosol 1
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra013951.1-P
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54120.1 Bra039198.1-P AT2G23420.1 21798944
AT1G54120.1 Bra013951.1-P AT4G26110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51400 Canola mitochondrion 100.0 100.0
AT1G54120.1 Thale cress plastid 83.06 83.06
Bra030903.1-P Field mustard mitochondrion 82.26 82.26
Bra021528.1-P Field mustard plastid 58.87 61.86
PGSC0003DMT400012536 Potato plastid 40.32 39.68
PGSC0003DMT400011173 Potato plastid 31.45 36.11
KRH06198 Soybean cytosol, plastid 37.9 35.88
Solyc06g062930.1.1 Tomato nucleus, plastid 36.29 35.71
KRH47616 Soybean cytosol 37.1 35.66
VIT_09s0002g01060.t01 Wine grape cytosol, plastid 37.1 34.85
PGSC0003DMT400058990 Potato plastid 29.84 29.13
Protein Annotations
EnsemblPlants:Bra037965.1EnsemblPlants:Bra037965.1-PEnsemblPlantsGene:Bra037965PANTHER:PTHR34788PANTHER:PTHR34788:SF1SEG:seg
UniParc:UPI000253E70BUniProt:M4FA51MapMan:35.2:::
Description
AT1G54120 (E=6e-043) | unknown protein
Coordinates
chrA06:-:386074..386448
Molecular Weight (calculated)
14404.0 Da
IEP (calculated)
12.427
GRAVY (calculated)
-0.269
Length
124 amino acids
Sequence
(BLAST)
001: MDPRIAATSV FRWSRSRRKI HIRRRKSQVV RLGGNHNVVP RGGFSLKKMV RKMKLRWLRL HYVRLVKKIN GFYRNLVKEF LDAGAELEAI QKRMAVEAGS
101: FAVPGFGLSF ASMSVHDRAR HFLV
Best Arabidopsis Sequence Match ( AT1G54120.1 )
(BLAST)
001: MDQRIAAIPV FRWSRSRRKI HIRRRKSQVV RLGGKNSAVS RGGFSLKKMV RRMKLRWLKL HYVRVVKKIK VFYRNLVKEF VDAGAELEAI QQRMAVEAAA
101: FAVPGLGLSF SSFSVHDRAR YFLV
Arabidopsis Description
F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.