Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
- nucleus 1
- peroxisome 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400000751 | |
| PGSC0003DMT400010254 | |
| PGSC0003DMT400055114 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54120.1 | PGSC0003DMT400010254 | AT2G23420.1 | 21798944 |
| AT1G54120.1 | PGSC0003DMT400000751 | AT4G26110.1 | 21798944 |
| AT1G54120.1 | PGSC0003DMT400055114 | AT4G26110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012536 | Potato | plastid | 42.59 | 36.51 |
| CDY26144 | Canola | mitochondrion | 36.11 | 33.33 |
| Bra030903.1-P | Field mustard | mitochondrion | 37.96 | 33.06 |
| CDY02481 | Canola | mitochondrion | 37.96 | 33.06 |
| AT1G54120.1 | Thale cress | plastid | 37.96 | 33.06 |
| AT3G14060.1 | Thale cress | plastid | 37.04 | 32.0 |
| Bra037965.1-P | Field mustard | mitochondrion | 36.11 | 31.45 |
| CDY56627 | Canola | mitochondrion | 36.11 | 31.45 |
| CDY51400 | Canola | mitochondrion | 36.11 | 31.45 |
| CDY33252 | Canola | plastid | 34.26 | 31.36 |
| CDY39092 | Canola | plastid | 34.26 | 31.36 |
| Bra021528.1-P | Field mustard | plastid | 34.26 | 31.36 |
| CDY33089 | Canola | mitochondrion, plastid | 35.19 | 30.65 |
| PGSC0003DMT400058990 | Potato | plastid | 34.26 | 29.13 |
| VIT_09s0002g01060.t01 | Wine grape | cytosol, plastid | 35.19 | 28.79 |
| KRH47616 | Soybean | cytosol | 31.48 | 26.36 |
| KRH06198 | Soybean | cytosol, plastid | 31.48 | 25.95 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011173 | EnsemblPlantsGene:PGSC0003DMG400004373 | PANTHER:PTHR34788 | PANTHER:PTHR34788:SF1 | PGSC:PGSC0003DMG400004373 | SEG:seg |
| UniParc:UPI000295E451 | UniProt:M0ZZ54 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004373]
Coordinates
chr12:-:52753604..52753930
Molecular Weight (calculated)
12492.6 Da
IEP (calculated)
11.165
GRAVY (calculated)
-0.338
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSPMPNTFN KSSHYHSSTT TIFRWRSRKI SLRGKKRTVW LGGEKKPGRG LILVNLYRRV KLKCMLKKVK YYYKSLVKEI MEGGSTLGSI QQRFILETSY
101: AVPALGFI
101: AVPALGFI
001: MDPHLVITAA SSAFRWPSSR RKIYLRRRKP QVVRLGGKNS TPRGSFSLKK VVTRMRLKWL RLYYVRLVKK IKAYYRTIVK EFEEAGAATI QQRMTVETAA
101: FAAPGLGLSF CPMSGYVDQP RFFLV
101: FAAPGLGLSF CPMSGYVDQP RFFLV
Arabidopsis Description
At3g14060 [Source:UniProtKB/TrEMBL;Acc:Q9LVJ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.