Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 7
- nucleus 1
- peroxisome 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400000751 | |
| PGSC0003DMT400010254 | |
| PGSC0003DMT400055114 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54120.1 | PGSC0003DMT400010254 | AT2G23420.1 | 21798944 |
| AT1G54120.1 | PGSC0003DMT400000751 | AT4G26110.1 | 21798944 |
| AT1G54120.1 | PGSC0003DMT400055114 | AT4G26110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012536 | Potato | plastid | 45.67 | 46.03 |
| VIT_09s0002g01060.t01 | Wine grape | cytosol, plastid | 36.22 | 34.85 |
| PGSC0003DMT400011173 | Potato | plastid | 29.13 | 34.26 |
| KRH06198 | Soybean | cytosol, plastid | 34.65 | 33.59 |
| KRH47616 | Soybean | cytosol | 33.86 | 33.33 |
| AT1G54120.1 | Thale cress | plastid | 31.5 | 32.26 |
| Bra021528.1-P | Field mustard | plastid | 29.13 | 31.36 |
| CDY39092 | Canola | plastid | 29.13 | 31.36 |
| Bra030903.1-P | Field mustard | mitochondrion | 29.92 | 30.65 |
| CDY02481 | Canola | mitochondrion | 29.92 | 30.65 |
| CDY33252 | Canola | plastid | 28.35 | 30.51 |
| AT3G14060.1 | Thale cress | plastid | 29.92 | 30.4 |
| CDY51400 | Canola | mitochondrion | 29.13 | 29.84 |
| CDY33089 | Canola | mitochondrion, plastid | 29.13 | 29.84 |
| Bra037965.1-P | Field mustard | mitochondrion | 29.13 | 29.84 |
| CDY26144 | Canola | mitochondrion | 26.77 | 29.06 |
| CDY56627 | Canola | mitochondrion | 28.35 | 29.03 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058990 | EnsemblPlantsGene:PGSC0003DMG400022907 | EntrezGene:102578607 | PANTHER:PTHR34788 | PANTHER:PTHR34788:SF1 | PGSC:PGSC0003DMG400022907 |
| RefSeq:XP_006343124.1 | SEG:seg | UniParc:UPI000294AD06 | UniProt:M1C3M1 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022907]
Coordinates
chr3:+:61433876..61434543
Molecular Weight (calculated)
14609.0 Da
IEP (calculated)
12.080
GRAVY (calculated)
-0.228
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYSDQISLN KSISHANSTS IFSQARRKLS FRRKKLPVIQ LGAGGKKHRR RFLLLRIFRR VRILKGLKLH YSNMAKKIKE FYWSAVNDIL EGNEAVDTFH
101: RGFVLQSSFA IPMLGLTPNA FSNRSVI
101: RGFVLQSSFA IPMLGLTPNA FSNRSVI
001: MDPHLVITAA SSAFRWPSSR RKIYLRRRKP QVVRLGGKNS TPRGSFSLKK VVTRMRLKWL RLYYVRLVKK IKAYYRTIVK EFEEAGAATI QQRMTVETAA
101: FAAPGLGLSF CPMSGYVDQP RFFLV
101: FAAPGLGLSF CPMSGYVDQP RFFLV
Arabidopsis Description
At3g14060 [Source:UniProtKB/TrEMBL;Acc:Q9LVJ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.