CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89363
CDX94372
CDY46076
CDY50005
CDY52429
CDY63965
CDY65997

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54120.1	CDY46076	AT2G23420.1	21798944
AT1G54120.1	CDY63965	AT2G23420.1	21798944
AT1G54120.1	CDX89363	AT4G26110.1	21798944
AT1G54120.1	CDX94372	AT4G26110.1	21798944
AT1G54120.1	CDY50005	AT4G26110.1	21798944
AT1G54120.1	CDY52429	AT4G26110.1	21798944
AT1G54120.1	CDY65997	AT4G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51400	Canola	mitochondrion	95.16	95.16
AT1G54120.1	Thale cress	plastid	81.45	81.45
CDY26144	Canola	mitochondrion	76.61	81.2
CDY02481	Canola	mitochondrion	80.65	80.65
CDY56627	Canola	mitochondrion	79.84	79.84
CDY39092	Canola	plastid	58.87	61.86
CDY33252	Canola	plastid	58.06	61.02
PGSC0003DMT400012536	Potato	plastid	40.32	39.68
KRH06198	Soybean	cytosol, plastid	38.71	36.64
KRH47616	Soybean	cytosol	37.9	36.43
Solyc06g062930.1.1	Tomato	nucleus, plastid	36.29	35.71
PGSC0003DMT400011173	Potato	plastid	30.65	35.19
VIT_09s0002g01060.t01	Wine grape	cytosol, plastid	36.29	34.09
PGSC0003DMT400058990	Potato	plastid	29.84	29.13

Protein Annotations

EnsemblPlants:CDY33089	EnsemblPlantsGene:GSBRNA2T00053738001	PANTHER:PTHR34788	PANTHER:PTHR34788:SF1	ProteinID:CDY33089	ProteinID:CDY33089.1
SEG:seg	UniParc:UPI0004EC39CD	UniProt:A0A078H6F6	MapMan:35.2	:	:

Description

BnaC06g06900DBnaC06g06900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6F6]

Coordinates

chrLK032305:-:397237..397611

Molecular Weight (calculated)

14261.8 Da

IEP (calculated)

12.373

GRAVY (calculated)

-0.207

Length

124 amino acids

Sequence
(BLAST)

001: MDPSIAATSV FRWSRGRRKI HIRRRKSQVV RLGGNNNVVP RGGFSLKKMV RKMKLRWLRL HYVRLVKKIN GFYRNLVKEF LDAGAEIEAI QKRMAVEAAS
101: FAVPGFGLSF ASMSVHDRAR HLLV

Best Arabidopsis Sequence Match ( AT1G54120.1 )
(BLAST)

001: MDQRIAAIPV FRWSRSRRKI HIRRRKSQVV RLGGKNSAVS RGGFSLKKMV RRMKLRWLKL HYVRVVKKIK VFYRNLVKEF VDAGAELEAI QQRMAVEAAA
101: FAVPGLGLSF SSFSVHDRAR YFLV

Arabidopsis Description

F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.