Factsheet for PGSC0003DMT400083995

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
plasma membrane 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003356
PGSC0003DMT400009491
PGSC0003DMT400012843
PGSC0003DMT400015012
PGSC0003DMT400015265
PGSC0003DMT400031865
PGSC0003DMT400044709
PGSC0003DMT400078323

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18350.1	PGSC0003DMT400009491	AT1G59580.1	19513235
AT1G73500.1	PGSC0003DMT400015265	AT2G01450.1	19513235
AT1G73500.1	PGSC0003DMT400078323	AT2G01450.1	19513235
AT1G73500.1	PGSC0003DMT400044709	AT2G42880.1	19513235
AT1G73500.1	PGSC0003DMT400003356	AT3G01180.1	21798944
AT1G73500.1	PGSC0003DMT400012843	AT4G01480.1	21798944
AT1G73500.1	PGSC0003DMT400015012	AT4G01480.1	21798944
AT1G73500.1	PGSC0003DMT400031865	AT4G01480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097920.1.1	Tomato	cytosol	97.3	96.72
VIT_17s0000g01970.t01	Wine grape	cytosol	66.97	71.02
KRH39022	Soybean	cytosol, mitochondrion	64.86	67.71
KRH48688	Soybean	mitochondrion	63.96	66.98
AT1G73500.1	Thale cress	mitochondrion	59.46	63.87
CDY11103	Canola	mitochondrion	58.56	63.52
Bra008099.1-P	Field mustard	mitochondrion	58.26	63.4
CDY71921	Canola	mitochondrion	58.26	63.4
CDX68224	Canola	mitochondrion	58.56	63.31
Bra003842.1-P	Field mustard	mitochondrion	58.56	63.31
CDX82067	Canola	mitochondrion	57.66	62.75
AT1G18350.1	Thale cress	mitochondrion	54.05	58.63
KRH39023	Soybean	mitochondrion	38.44	57.66
KRH48686	Soybean	mitochondrion	39.34	54.58
CDY05240	Canola	mitochondrion	51.95	54.57
Bra020769.1-P	Field mustard	plastid	50.15	54.22
CDY24712	Canola	mitochondrion	51.35	53.94
AT3G06230.1	Thale cress	plastid	44.14	50.17
PGSC0003DMT400023739	Potato	plastid	46.85	42.16
PGSC0003DMT400000744	Potato	cytosol	37.84	35.29
PGSC0003DMT400014637	Potato	cytosol	35.74	33.62
PGSC0003DMT400074400	Potato	cytosol	25.53	22.79
PGSC0003DMT400039329	Potato	cytosol	31.83	20.58
PGSC0003DMT400042095	Potato	cytosol	24.32	15.49
PGSC0003DMT400036874	Potato	cytosol	26.13	12.97
PGSC0003DMT400031593	Potato	nucleus	3.3	2.33

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102599347	MapMan:18.4.2.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1D7H2	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400033696
PGSC:PGSC0003DMG400033696	EnsemblPlants:PGSC0003DMT400083995	PIRSF:PIRSF000654	PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF453	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296E4B2	RefSeq:XP_006363984.1	SEG:seg

Description

MAPKK [Source:PGSC_GENE;Acc:PGSC0003DMG400033696]

Coordinates

chr3:-:45350611..45351985

Molecular Weight (calculated)

37259.0 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.290

Length

333 amino acids

Sequence
(BLAST)

001: MALVRDRRHL NLRLPLPEPS ERRPRFPLPL PPSSVSTVNS TANTTTTTTT TTTASTTTIS ISELEKLKVL GHGNGGTVYE VRHKRTSAIY ALKVVHGDSD
101: PEIRRQILRE ISILRRTDSP YVIKCHGVVD MPGGDIGILM EYMNAGTLEN LLKSQSTFSE LCLAKIAKQV LGGLDYLHSH KIIHRDLKPS NLLVNREMEV
201: KIADFGVSKI MGRTLDPCNS YVGTCAYMSP ERFDPDTYGA NYNGYAADIW SLGLTLMELY MGHFPFLPPG QRPDWATLMC AICFGEPPSL PENTSEKFND
301: FMKCCLQKES SKRWSAHQLL QHPFIQSIDL KST

Best Arabidopsis Sequence Match ( AT1G73500.1 )
(BLAST)

001: MALVRERRQL NLRLPLPPIS DRRFSTSSSS ATTTTVAGCN GISACDLEKL NVLGCGNGGI VYKVRHKTTS EIYALKTVNG DMDPIFTRQL MREMEILRRT
101: DSPYVVKCHG IFEKPVVGEV SILMEYMDGG TLESLRGGVT EQKLAGFAKQ ILKGLSYLHA LKIVHRDIKP ANLLLNSKNE VKIADFGVSK ILVRSLDSCN
201: SYVGTCAYMS PERFDSESSG GSSDIYAGDI WSFGLMMLEL LVGHFPLLPP GQRPDWATLM CAVCFGEPPR APEGCSEEFR SFVECCLRKD SSKRWTAPQL
301: LAHPFLREDL

Arabidopsis Description

MKK9Mitogen-activated protein kinase kinase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX43]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.