Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU2Hr1G023170.1 | Barley | cytosol | 88.46 | 95.44 |
Os07t0657900-02 | Rice | plastid | 85.0 | 85.83 |
GSMUA_Achr8P09560_001 | Banana | cytosol | 36.92 | 83.12 |
KXG36845 | Sorghum | plastid | 81.92 | 81.3 |
PGSC0003DMT400070106 | Potato | cytosol | 35.58 | 80.09 |
GSMUA_Achr8P09570_001 | Banana | cytosol | 25.77 | 76.57 |
TraesCS2A01G132200.1 | Wheat | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 87.88 | 76.55 |
Zm00001d022381_P016 | Maize | plastid | 81.35 | 76.49 |
KRH33290 | Soybean | nucleus | 76.15 | 76.3 |
Bra000234.1-P | Field mustard | plastid | 74.23 | 75.54 |
CDY35405 | Canola | plastid | 74.04 | 75.34 |
CDY22534 | Canola | plastid | 73.85 | 75.15 |
KRH72015 | Soybean | nucleus | 75.38 | 75.1 |
VIT_08s0007g08760.t01 | Wine grape | plastid | 75.38 | 74.1 |
AT2G41680.1 | Thale cress | plastid | 75.38 | 74.1 |
Bra004639.1-P | Field mustard | plastid | 74.23 | 74.09 |
CDX79923 | Canola | mitochondrion, plastid | 74.42 | 72.47 |
CDY23835 | Canola | plastid | 74.62 | 71.45 |
Solyc10g080080.1.1 | Tomato | plastid | 73.65 | 70.53 |
PGSC0003DMT400060907 | Potato | plastid | 73.27 | 70.17 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 75.19 | 69.08 |
Solyc04g016010.2.1 | Tomato | nucleus | 67.5 | 65.36 |
TraesCS7B01G194200.1 | Wheat | golgi | 34.42 | 48.51 |
TraesCS6B01G306300.1 | Wheat | cytosol | 30.77 | 48.19 |
PGSC0003DMT400070103 | Potato | plastid | 18.46 | 44.65 |
Protein Annotations
KEGG:00450+1.8.1.9 | MapMan:10.5.2 | Gene3D:3.40.30.10 | Gene3D:3.50.50.60 | InterPro:FAD/NAD-bd_sf | InterPro:FAD/NAD-binding_dom |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009056 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0016671 |
GO:GO:0019430 | GO:GO:0019725 | GO:GO:0042744 | GO:GO:0042802 | GO:GO:0045454 | GO:GO:0055114 |
InterPro:IPR013766 | InterPro:IPR036188 | PFAM:PF00085 | PFAM:PF07992 | PRINTS:PR00368 | PRINTS:PR00469 |
ScanProsite:PS00194 | ScanProsite:PS00573 | PFscan:PS51352 | PANTHER:PTHR42863 | PANTHER:PTHR42863:SF1 | InterPro:Pyr_nucl-diS_OxRdtase_2_AS |
InterPro:Pyridine_nuc-diS_OxRdtase_2 | SUPFAM:SSF51905 | SUPFAM:SSF52833 | TIGRFAMs:TIGR01292 | InterPro:Thioredox_Rdtase | InterPro:Thioredoxin-like_sf |
InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS2B01G154700 | EnsemblPlants:TraesCS2B01G154700.1 | TIGR:cd02949 | SEG:seg |
Description
No Description!
Coordinates
chr2B:-:122741460..122746997
Molecular Weight (calculated)
56576.5 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.279
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTRLAVAA ALSSAPPSSR RGRAAPSSCR PLPAASCSRA PKSKALRATA APAADAVDEE APASSPPSDP GRGVENLVII GSGPAGYTAA IYAARANLKP
101: VVFEGYQVGG VPGGQLMTTT EVENFPGFPD GITGPDLMDK MRKQAERWGA ELHQEDVEFI DVKSRPFVIR SSDREVKSHS VIIATGATAK RLRLPREEEF
201: WSRGISACAI CDGASPLYKG QVLAVVGGGD TATEEAIYLT KYACHVHLLV RRDQLRASKA MQDRVLNNPN ITVHFNTEAV DVVGNTKGQM SGIQLRRIDT
301: GEEKVLEVKG LFYGIGHTPN SQLLQGQIEL DSSGYILVDE GTAKTSVDGV FAAGDVQDHE WRQAVTAAGS GCIAALSVER YLVSNDLLVE FHQPVREEKK
401: KEIEGKDVEM GFDITHTKHK GQYALRKLYH GSPRLILVLY TSPTCGPCRT LKPILNKVID EYDEYVHFVE IDIEEDPEIA EAAGIMGTPC VQFFKNKEMI
501: RTFSGVKMKK EYREFIESNK
101: VVFEGYQVGG VPGGQLMTTT EVENFPGFPD GITGPDLMDK MRKQAERWGA ELHQEDVEFI DVKSRPFVIR SSDREVKSHS VIIATGATAK RLRLPREEEF
201: WSRGISACAI CDGASPLYKG QVLAVVGGGD TATEEAIYLT KYACHVHLLV RRDQLRASKA MQDRVLNNPN ITVHFNTEAV DVVGNTKGQM SGIQLRRIDT
301: GEEKVLEVKG LFYGIGHTPN SQLLQGQIEL DSSGYILVDE GTAKTSVDGV FAAGDVQDHE WRQAVTAAGS GCIAALSVER YLVSNDLLVE FHQPVREEKK
401: KEIEGKDVEM GFDITHTKHK GQYALRKLYH GSPRLILVLY TSPTCGPCRT LKPILNKVID EYDEYVHFVE IDIEEDPEIA EAAGIMGTPC VQFFKNKEMI
501: RTFSGVKMKK EYREFIESNK
001: MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD SLRLRVSATA NSPSSSSSGG EIIENVVIIG SGPAGYTAAI
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK
101: YAARANLKPV VFEGYQMGGV PGGQLMTTTE VENFPGFPDG ITGPDLMEKM RKQAERWGAE LYPEDVESLS VTTAPFTVQT SERKVKCHSI IYATGATARR
201: LRLPREEEFW SRGISACAIC DGASPLFKGQ VLAVVGGGDT ATEEALYLTK YARHVHLLVR RDQLRASKAM QDRVINNPNI TVHYNTETVD VLSNTKGQMS
301: GILLRRLDTG EETELEAKGL FYGIGHSPNS QLLEGQVELD SSGYVLVREG TSNTSVEGVF AAGDVQDHEW RQAVTAAGSG CIAALSAERY LTSNNLLVEF
401: HQPQTEEAKK EFTQRDVQEK FDITLTKHKG QYALRKLYHE SPRVILVLYT SPTCGPCRTL KPILNKVVDE YNHDVHFVEI DIEEDQEIAE AAGIMGTPCV
501: QFFKNKEMLR TISGVKMKKE YREFIEANK
Arabidopsis Description
NTRCThioredoxin reductase [Source:UniProtKB/TrEMBL;Acc:A0A178VZE7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.