Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G223900.1 | Wheat | plastid | 96.11 | 96.11 |
| TraesCS2D01G204300.1 | Wheat | plastid | 96.11 | 96.11 |
| HORVU2Hr1G038060.1 | Barley | plastid | 87.63 | 88.57 |
| Os07t0572300-01 | Rice | plastid | 81.27 | 80.99 |
| Zm00001d021869_P001 | Maize | plastid | 71.02 | 70.77 |
| OQU90135 | Sorghum | plastid | 75.62 | 62.94 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 51.59 | 55.3 |
| TraesCS5A01G456500.1 | Wheat | plastid | 56.54 | 54.79 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 50.18 | 54.41 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 53.71 | 52.41 |
| Solyc01g097790.2.1 | Tomato | cytosol | 54.42 | 51.51 |
| PGSC0003DMT400057872 | Potato | cytosol | 54.42 | 51.51 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 50.88 | 50.53 |
| VIT_07s0151g00930.t01 | Wine grape | cytosol, plastid | 53.36 | 50.33 |
| KRH71412 | Soybean | cytosol | 53.0 | 49.83 |
| KRH32026 | Soybean | cytosol, plastid | 52.65 | 49.67 |
| VIT_05s0020g03340.t01 | Wine grape | cytosol | 51.94 | 49.0 |
| KRH68710 | Soybean | plastid | 50.88 | 48.48 |
| Bra040118.1-P | Field mustard | plastid | 47.35 | 47.52 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 48.41 | 47.4 |
| AT3G04860.1 | Thale cress | plastid | 48.41 | 47.4 |
| CDY21108 | Canola | plastid | 47.0 | 47.16 |
| CDY30020 | Canola | cytosol, plastid | 47.0 | 47.16 |
| CDY52485 | Canola | plastid | 48.76 | 47.1 |
| KRG92651 | Soybean | cytosol | 49.82 | 47.0 |
| KRG95548 | Soybean | cytosol | 49.82 | 46.84 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 49.82 | 46.84 |
| Bra009991.1-P | Field mustard | plastid | 48.41 | 46.76 |
| CDX86191 | Canola | plastid | 48.41 | 46.76 |
| KRG96949 | Soybean | cytosol, plastid | 50.53 | 46.73 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 45.94 | 46.1 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 46.64 | 45.99 |
| CDY00013 | Canola | cytosol, plastid | 47.35 | 45.42 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 45.23 | 44.76 |
| PGSC0003DMT400077341 | Potato | cytosol, peroxisome, plasma membrane | 47.7 | 44.55 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 47.35 | 44.22 |
| KRH67230 | Soybean | cytosol | 48.06 | 43.45 |
| Bra036119.1-P | Field mustard | mitochondrion | 48.06 | 35.6 |
| TraesCS3A01G415900.1 | Wheat | plastid | 34.63 | 30.82 |
| TraesCS6A01G161700.1 | Wheat | cytosol | 33.92 | 30.67 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 48.06 | 30.63 |
| TraesCS1A01G026000.1 | Wheat | cytosol | 32.16 | 29.93 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 33.57 | 28.02 |
| TraesCS5A01G130200.1 | Wheat | plastid | 30.04 | 26.98 |
| TraesCS4A01G183900.1 | Wheat | plastid | 28.62 | 25.71 |
| TraesCS7A01G277900.1 | Wheat | plastid | 26.5 | 25.25 |
| TraesCS4A01G302100.1 | Wheat | cytosol | 27.56 | 22.03 |
| TraesCS5A01G226100.1 | Wheat | plastid | 30.04 | 20.53 |
| TraesCS7A01G146000.1 | Wheat | plastid | 24.38 | 20.23 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G196200.1 | EnsemblPlantsGene:TraesCS2A01G196200 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF15 | PFAM:PF05910 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:166083983..166086310
Molecular Weight (calculated)
31415.9 Da
IEP (calculated)
8.994
GRAVY (calculated)
-0.157
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDLASCLSQ TGVQVAHPSS SSAQSMVQCA YLARLRGKSC RVTVTWSKAA MGQALAIAVH DPSGRCLCKT EIKPWLFSKR KGSKAMEVDG GALDILWDLS
101: SAKFAGGPEP VQGYYVALIF DLEAVLVLGD MPRVGDHKAS SDALPCDAAM IARKEHTYGK KVYCTKARFS DIGQHHHITI ECDTSGTKDP SLEIRIGKKR
201: VLQVKRLAWN FRGNQMFYVD GLPVEVLWDV HDWLFGSSNG CAVFLFQSGR SMEKFLARSC SQDEKERQVH RFGFTLLLHA WKV
101: SAKFAGGPEP VQGYYVALIF DLEAVLVLGD MPRVGDHKAS SDALPCDAAM IARKEHTYGK KVYCTKARFS DIGQHHHITI ECDTSGTKDP SLEIRIGKKR
201: VLQVKRLAWN FRGNQMFYVD GLPVEVLWDV HDWLFGSSNG CAVFLFQSGR SMEKFLARSC SQDEKERQVH RFGFTLLLHA WKV
001: MSFRSHSRGS SQFAEKVTED PVTYKTAQST VTCIYQAHIS GFWRNVTVLW SKNLMNHSLM VMVTNVEGDM NYCCKVDLKP WHFWNKKGYK SFDVEGNPVE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
101: VYWDFRSAKF TSSPEPSSDF YVALVSEEEV VLLVGDYKKK AFKRTKSRPA LVEAALFYKK ENVFGKKCFT TRAKFYDRKK EHEIIVESST SGPKEPEMWI
201: SIDGIVLIQV KNLQWKFRGN QTVLVDKQPV QVFWDVYDWL FSMPGTGHGL FIFKPGTTED SDMEGSGHGG GGGGESDTST GSRYYSTKSS NPWPPEFCLF
301: LHAYKLE
Arabidopsis Description
DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SI11]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.