Factsheet for VIT_05s0020g03340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	69.0	72.63
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	70.67	70.67
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	61.33	70.5
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	59.67	67.8
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	67.67	67.0
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	67.0	66.34
GSMUA_Achr5P24690_001	Banana	cytosol	63.33	65.52
HORVU5Hr1G109570.1	Barley	cytosol, plastid	62.67	64.38
EER93250	Sorghum	cytosol, plastid	62.33	64.26
TraesCS5A01G456500.1	Wheat	plastid	62.33	64.04
Zm00001d013042_P001	Maize	plastid	61.67	63.57
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	61.33	63.23
Zm00001d034527_P001	Maize	plastid	61.33	62.59
TraesCS5D01G467300.1	Wheat	cytosol, plastid	62.0	60.39
Os07t0572300-01	Rice	plastid	54.33	57.39
TraesCS5B01G465500.1	Wheat	plastid	62.67	55.95
HORVU2Hr1G038060.1	Barley	plastid	50.67	54.29
TraesCS2B01G223900.1	Wheat	plastid	50.67	53.71
TraesCS2D01G204300.1	Wheat	plastid	50.33	53.36
Zm00001d021869_P001	Maize	plastid	50.0	52.82
TraesCS2A01G196200.1	Wheat	plastid	49.0	51.94
OQU90135	Sorghum	plastid	51.67	45.59
VIT_06s0061g01360.t01	Wine grape	plastid	41.67	41.81
VIT_17s0000g09400.t01	Wine grape	cytosol	43.0	39.21
VIT_12s0057g01390.t01	Wine grape	mitochondrion	39.0	37.5
VIT_01s0137g00740.t01	Wine grape	cytosol	36.33	36.33
VIT_08s0007g03840.t01	Wine grape	nucleus	36.0	35.88
VIT_04s0008g05970.t01	Wine grape	plastid	37.33	30.19
VIT_14s0030g01700.t01	Wine grape	plastid	31.67	29.14

Protein Annotations

EntrezGene:100246068	wikigene:100246068	MapMan:35.2	EMBL:AM468012	ProteinID:CAN68226	ProteinID:CAN68226.1
ProteinID:CCB50418	ProteinID:CCB50418.1	InterPro:DUF868_pln	UniProt:F6HDP7	EMBL:FN595749	EntrezGene:LOC100246068
wikigene:LOC100246068	PFAM:PF05910	PANTHER:PTHR31972	PANTHER:PTHR31972:SF4	UniParc:UPI00015C76BE	ArrayExpress:VIT_05s0020g03340
EnsemblPlantsGene:VIT_05s0020g03340	EnsemblPlants:VIT_05s0020g03340.t01	unigene:Vvi.20576	RefSeq:XP_002278344	RefSeq:XP_002278344.1	RefSeq:XP_010649892.1

Description

No Description!

Coordinates

chr5:-:5098458..5099384

Molecular Weight (calculated)

33878.7 Da

IEP (calculated)

7.881

GRAVY (calculated)

-0.086

Length

300 amino acids

Sequence
(BLAST)

001: MRDFPSCFGE NGVQVADSTS SGVSRSTAQN LVTCVYSCKL GGKSCLIIIT WSKNLVGQCL SVEIDDWMNQ CLCKFDIKPW LFAKRKGSKS FEINSIQVDT
101: YWDLSLAKFG SGPEPLEGFY LAVVFNGEMV LLLGDMRKEA FKKTNATPGF YNAIFVSKKE HIFGKKLYGT KAQFWDNGQN HNLSIECDTV GTDDPFLAIR
201: IDSKMVMQVK HLRWKFRGNQ TILIDGLPVE VFWDVHNWLF GPSVGNAVFM FQTCSSAEKL WSSQPFFDSS ALLSPCSQNF REFKLQGLGF SLILYAWKNE

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.