Factsheet for Zm00001d034527_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011696_P002
Zm00001d034000_P002
Zm00001d043693_P002
Zm00001d053726_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	Zm00001d034000_P002	AT1G05410.1	21798944
AT3G04860.1	Zm00001d053726_P001	AT4G32190.1	21798944
AT5G28150.1	Zm00001d011696_P002	AT4G26100.1	21798944
AT5G28150.1	Zm00001d043693_P002	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93250	Sorghum	cytosol, plastid	93.2	94.16
Zm00001d013042_P001	Maize	plastid	92.52	93.47
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	88.78	89.69
HORVU5Hr1G109570.1	Barley	cytosol, plastid	87.07	87.67
TraesCS5A01G456500.1	Wheat	plastid	87.07	87.67
TraesCS5D01G467300.1	Wheat	cytosol, plastid	86.05	82.14
TraesCS5B01G465500.1	Wheat	plastid	86.39	75.6
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	64.97	73.18
GSMUA_Achr5P24690_001	Banana	cytosol	70.41	71.38
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	63.27	70.45
KRH71412	Soybean	cytosol	64.97	63.46
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	64.29	63.0
KRH32026	Soybean	cytosol, plastid	63.95	62.67
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	59.86	61.75
VIT_05s0020g03340.t01	Wine grape	cytosol	62.59	61.33
Solyc01g097790.2.1	Tomato	cytosol	62.24	61.2
PGSC0003DMT400057872	Potato	cytosol	61.9	60.87
KRG95548	Soybean	cytosol	62.24	60.8
KRG92651	Soybean	cytosol	60.54	59.33
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	60.2	58.8
KRH68710	Soybean	plastid	59.18	58.59
KRH67230	Soybean	cytosol	60.2	56.55
KRG96949	Soybean	cytosol, plastid	58.84	56.54
Zm00001d021869_P001	Maize	plastid	54.42	56.34
AT5G28150.1	Thale cress	cytosol, plastid	55.1	56.06
Bra009991.1-P	Field mustard	plastid	55.78	55.97
CDX86191	Canola	plastid	55.78	55.97
CDY52485	Canola	plastid	55.44	55.63
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	57.14	55.45
AT3G04860.1	Thale cress	plastid	54.42	55.36
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	56.8	55.12
CDY00013	Canola	cytosol, plastid	55.1	54.92
CDY72112	Canola	cytosol, peroxisome, plastid	51.02	53.19
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	51.36	52.8
CDY50761	Canola	cytosol, peroxisome, plastid	51.36	52.61
CDY30020	Canola	cytosol, plastid	49.32	51.42
CDY21108	Canola	plastid	48.64	50.71
Bra040118.1-P	Field mustard	plastid	47.96	50.0
Bra036119.1-P	Field mustard	mitochondrion	55.1	42.41
Zm00001d015796_P001	Maize	cytosol	24.15	36.98
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	55.1	36.49
Zm00001d053654_P001	Maize	plastid	34.01	33.78
Zm00001d042425_P001	Maize	plastid	35.37	33.44
Zm00001d035694_P001	Maize	cytosol	32.65	31.58
Zm00001d025337_P001	Maize	cytosol	32.65	27.83
Zm00001d031962_P001	Maize	plastid	29.25	27.22
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	31.29	26.74
Zm00001d052520_P001	Maize	plastid	28.23	26.02
Zm00001d004919_P001	Maize	plastid	27.21	24.77
Zm00001d050436_P001	Maize	plastid	31.29	22.55
Zm00001d045119_P001	Maize	plastid	26.87	22.51
Zm00001d005752_P001	Maize	plastid	30.95	21.62
Zm00001d032164_P001	Maize	plastid	29.59	21.53
Zm00001d020470_P001	Maize	plastid	30.61	21.38
Zm00001d037575_P001	Maize	cytosol	10.54	12.86

Protein Annotations

EMBL:BT060744	EMBL:BT061778	EnsemblPlants:Zm00001d034527_P001	EnsemblPlants:Zm00001d034527_T001	EnsemblPlantsGene:Zm00001d034527	EntrezGene:100381620
InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF4	PFAM:PF05910	ProteinID:ONM10501.1	SEG:seg
UniParc:UPI000194852D	UniProt:C0HEI8	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1:+:295685533..295686417

Molecular Weight (calculated)

32433.7 Da

IEP (calculated)

7.996

GRAVY (calculated)

-0.124

Length

294 amino acids

Sequence
(BLAST)

001: MRDFPSCFGE SGVQIADASS SSSSSAGKGA AQNLVTCLYQ THFSGRPCVI SLTWSKSLMG QGLSVGVDDL SSGHCLCKAD IKPWLFSKKK GSRSLDVEDG
101: KVEIFWDLSG ARFGAGPEPV EGFYVAVVFD LELALLLGDM KKDAYRKTGA SQSTLNAAAF VARREHIYGK KIYSAKAQFC DNGQFHDIAI ECDTVGFKDP
201: CLEIRVDKKP VMQVKRLAWK FRGNQAILVD GLPVEVFWDV HSWLFGSTAS NAVFMFQTRQ APEKSLPWSY SQNFRESQLQ GLGFSLILHA WKVE

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.