Factsheet for Zm00001d013042_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011696_P002
Zm00001d034000_P002
Zm00001d043693_P002
Zm00001d053726_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04860.1	Zm00001d034000_P002	AT1G05410.1	21798944
AT3G04860.1	Zm00001d053726_P001	AT4G32190.1	21798944
AT5G28150.1	Zm00001d011696_P002	AT4G26100.1	21798944
AT5G28150.1	Zm00001d043693_P002	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93250	Sorghum	cytosol, plastid	96.56	96.56
Zm00001d034527_P001	Maize	plastid	93.47	92.52
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	92.44	92.44
HORVU5Hr1G109570.1	Barley	cytosol, plastid	89.0	88.7
TraesCS5A01G456500.1	Wheat	plastid	89.0	88.7
TraesCS5D01G467300.1	Wheat	cytosol, plastid	87.97	83.12
TraesCS5B01G465500.1	Wheat	plastid	88.32	76.49
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	66.67	74.33
GSMUA_Achr5P24690_001	Banana	cytosol	72.16	72.41
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	65.29	71.97
KRH71412	Soybean	cytosol	66.32	64.12
VIT_07s0151g00930.t01	Wine grape	cytosol, plastid	65.64	63.67
KRH32026	Soybean	cytosol, plastid	65.64	63.67
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	61.86	63.16
KRG95548	Soybean	cytosol	64.6	62.46
Solyc01g097790.2.1	Tomato	cytosol	63.92	62.21
PGSC0003DMT400057872	Potato	cytosol	63.57	61.87
VIT_05s0020g03340.t01	Wine grape	cytosol	63.57	61.67
KRG92651	Soybean	cytosol	62.2	60.33
KRH68710	Soybean	plastid	61.51	60.27
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	61.86	59.8
KRG96949	Soybean	cytosol, plastid	61.17	58.17
KRH67230	Soybean	cytosol	62.54	58.15
AT3G04860.1	Thale cress	plastid	57.73	58.13
CDX86191	Canola	plastid	58.08	57.68
Bra009991.1-P	Field mustard	plastid	58.08	57.68
AT5G28150.1	Thale cress	cytosol, plastid	57.04	57.44
CDY52485	Canola	plastid	57.73	57.34
CDY00013	Canola	cytosol, plastid	57.39	56.61
PGSC0003DMT400077341	Potato	cytosol, peroxisome, plasma membrane	58.76	56.44
Solyc09g075960.1.1	Tomato	nucleus, peroxisome, plasma membrane	58.42	56.11
CDY72112	Canola	cytosol, peroxisome, plastid	53.95	55.67
Zm00001d021869_P001	Maize	plastid	53.95	55.28
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	53.61	54.55
CDY50761	Canola	cytosol, peroxisome, plastid	53.61	54.36
CDY30020	Canola	cytosol, plastid	51.2	52.84
CDY21108	Canola	plastid	51.2	52.84
Bra040118.1-P	Field mustard	plastid	50.52	52.13
Bra036119.1-P	Field mustard	mitochondrion	57.39	43.72
Zm00001d015796_P001	Maize	cytosol	26.12	39.58
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	57.39	37.61
Zm00001d053654_P001	Maize	plastid	35.4	34.8
Zm00001d042425_P001	Maize	plastid	36.77	34.41
Zm00001d035694_P001	Maize	cytosol	32.3	30.92
Zm00001d025337_P001	Maize	cytosol	32.99	27.83
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	31.96	27.03
Zm00001d031962_P001	Maize	plastid	28.52	26.27
Zm00001d052520_P001	Maize	plastid	28.18	25.71
Zm00001d004919_P001	Maize	plastid	27.15	24.46
Zm00001d050436_P001	Maize	plastid	31.27	22.3
Zm00001d045119_P001	Maize	plastid	26.46	21.94
Zm00001d032164_P001	Maize	plastid	30.24	21.78
Zm00001d005752_P001	Maize	plastid	30.93	21.38
Zm00001d020470_P001	Maize	plastid	30.93	21.38
Zm00001d037575_P001	Maize	cytosol	9.97	12.03

Protein Annotations

EnsemblPlants:Zm00001d013042_P001	EnsemblPlants:Zm00001d013042_T001	EnsemblPlantsGene:Zm00001d013042	EntrezGene:107546749	InterPro:DUF868_pln	PANTHER:PTHR31972
PANTHER:PTHR31972:SF4	PFAM:PF05910	ProteinID:AQK62225.1	SEG:seg	UniParc:UPI0002210DB4	UniProt:A0A1D6GF77
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:3621250..3622125

Molecular Weight (calculated)

32280.7 Da

IEP (calculated)

7.676

GRAVY (calculated)

-0.095

Length

291 amino acids

Sequence
(BLAST)

001: MRDFPSCFGE SGVQIADASS SSSSAGKGAA QNLVTCLYQT QFSGRPCVIS LTWSRSLMGQ GLSVGVDDLS GHCLCKADIK PWLFSKKKGS KSLDVEDGKI
101: DIFWDLSGAK FGAGPEPVEG FYVAVVFDLE LVLLLGDMKK DAYRKTGANR SMLNAAFVAR REHIYGKKTY SAKAQFCDNG QFHDIVIDCD TVDLKDPCLE
201: IRVDKKPVMQ VKRLAWKFRG NQTILVDGLP VEVFWDVHSW LFGSTASNAV FMFQTCQAPE KSLPWSYSQI FRESQLQGLG FSLILHAWKL E

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.