Factsheet for Bra009991.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013949.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28150.1	Bra013949.1-P	AT4G26100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86191	Canola	plastid	100.0	100.0
AT5G28150.1	Thale cress	cytosol, plastid	90.44	91.7
Bra040410.1-P	Field mustard	cytosol, nucleus, peroxisome	76.11	77.97
Bra040118.1-P	Field mustard	plastid	72.35	75.18
Bra036119.1-P	Field mustard	mitochondrion	92.49	70.94
VIT_14s0030g01760.t01	Wine grape	cytosol, plastid	67.58	69.47
KRH34070	Soybean	cytosol, endoplasmic reticulum, nucleus	68.94	67.11
KRG92651	Soybean	cytosol	68.26	66.67
KRH68710	Soybean	plastid	66.55	65.66
KRG96949	Soybean	cytosol, plastid	67.92	65.03
PGSC0003DMT400057872	Potato	cytosol	63.82	62.54
Solyc01g097790.2.1	Tomato	cytosol	63.82	62.54
GSMUA_Achr7P07540_001	Banana	endoplasmic reticulum, nucleus, peroxisome, plastid	54.61	61.3
GSMUA_Achr7P01840_001	Banana	cytosol, peroxisome, plastid	54.95	60.98
Os03t0806700-01	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	58.36	58.76
Zm00001d013042_P001	Maize	plastid	57.68	58.08
EER93250	Sorghum	cytosol, plastid	57.68	58.08
GSMUA_Achr5P24690_001	Banana	cytosol	57.34	57.93
HORVU5Hr1G109570.1	Barley	cytosol, plastid	56.66	56.85
TraesCS5A01G456500.1	Wheat	plastid	56.31	56.51
Zm00001d034527_P001	Maize	plastid	55.97	55.78
TraesCS5D01G467300.1	Wheat	cytosol, plastid	56.31	53.57
Os07t0572300-01	Rice	plastid	51.88	53.52
HORVU2Hr1G038060.1	Barley	plastid	49.83	52.14
TraesCS2B01G223900.1	Wheat	plastid	48.46	50.18
TraesCS2D01G204300.1	Wheat	plastid	48.46	50.18
TraesCS5B01G465500.1	Wheat	plastid	56.66	49.4
TraesCS2A01G196200.1	Wheat	plastid	46.76	48.41
Zm00001d021869_P001	Maize	plastid	46.42	47.89
OQU90135	Sorghum	plastid	48.46	41.76
Bra015139.1-P	Field mustard	nucleus	38.91	37.75
Bra034367.1-P	Field mustard	plastid	35.49	32.0
Bra037498.1-P	Field mustard	plastid	34.81	31.58
Bra036180.1-P	Field mustard	plastid	34.47	31.37
Bra020708.1-P	Field mustard	mitochondrion	33.79	30.75
Bra001495.1-P	Field mustard	cytosol	29.35	29.55
Bra028555.1-P	Field mustard	nucleus	31.06	26.53
Bra008998.1-P	Field mustard	nucleus, peroxisome, plastid	33.79	25.52
Bra023071.1-P	Field mustard	cytosol	27.3	24.92
Bra007811.1-P	Field mustard	plastid	26.96	22.57

Protein Annotations

EnsemblPlants:Bra009991.1	EnsemblPlants:Bra009991.1-P	EnsemblPlantsGene:Bra009991	InterPro:DUF868_pln	ncoils:Coil	PANTHER:PTHR31972
PANTHER:PTHR31972:SF40	PFAM:PF05910	SEG:seg	UniParc:UPI000253EE53	UniProt:M4D0J3	MapMan:35.2

Description

AT5G28150 (E=3e-145) | unknown protein

Coordinates

chrA06:+:18496798..18497679

Molecular Weight (calculated)

32226.7 Da

IEP (calculated)

8.888

GRAVY (calculated)

-0.062

Length

293 amino acids

Sequence
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SNSGKNAQNL VACIYQCRIR GRSCLITVTW AKSLMGQSVT VGVDDSCNNQ SLCKVEIKPW LFTKRKGSKS LEAYSCKIDV
101: FWDLSSAKFG SGPEALGGFY VSVVVDKEMV LLLGDMRKEA FKKTNASPSS SLGAVFVAKK EHVFGKRAFA TKAELCADGK IHDVVIECDT SVTDPCLVVR
201: VDGKTLLQVK RLKWKFRGND TIVVNRMAVE VLWDVHSWLF GMPSAGNAVF MFRTCQSSSE KSLSFSQDVM ATTTNSKSQS FGFSLILYAW KNE

Best Arabidopsis Sequence Match ( AT5G28150.1 )
(BLAST)

001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE

Arabidopsis Description

At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.