Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- peroxisome 1
- mitochondrion 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057872 | Potato | cytosol | 99.33 | 99.33 |
| VIT_14s0030g01760.t01 | Wine grape | cytosol, plastid | 73.24 | 76.84 |
| KRG92651 | Soybean | cytosol | 71.91 | 71.67 |
| KRH34070 | Soybean | cytosol, endoplasmic reticulum, nucleus | 70.9 | 70.43 |
| KRH68710 | Soybean | plastid | 68.56 | 69.02 |
| KRG96949 | Soybean | cytosol, plastid | 69.57 | 67.97 |
| GSMUA_Achr7P07540_001 | Banana | endoplasmic reticulum, nucleus, peroxisome, plastid | 58.53 | 67.05 |
| GSMUA_Achr5P24690_001 | Banana | cytosol | 63.55 | 65.52 |
| Os03t0806700-01 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 63.55 | 65.29 |
| CDY52485 | Canola | plastid | 63.88 | 65.19 |
| AT5G28150.1 | Thale cress | cytosol, plastid | 62.88 | 65.05 |
| AT3G04860.1 | Thale cress | plastid | 62.88 | 65.05 |
| EER93250 | Sorghum | cytosol, plastid | 63.21 | 64.95 |
| GSMUA_Achr7P01840_001 | Banana | cytosol, peroxisome, plastid | 56.86 | 64.39 |
| TraesCS5A01G456500.1 | Wheat | plastid | 62.88 | 64.38 |
| HORVU5Hr1G109570.1 | Barley | cytosol, plastid | 62.54 | 64.04 |
| Zm00001d013042_P001 | Maize | plastid | 62.21 | 63.92 |
| CDX86191 | Canola | plastid | 62.54 | 63.82 |
| Bra009991.1-P | Field mustard | plastid | 62.54 | 63.82 |
| CDY50761 | Canola | cytosol, peroxisome, plastid | 60.54 | 63.07 |
| CDY00013 | Canola | cytosol, plastid | 62.21 | 63.05 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 63.88 | 63.04 |
| Bra040410.1-P | Field mustard | cytosol, nucleus, peroxisome | 60.2 | 62.94 |
| CDY72112 | Canola | cytosol, peroxisome, plastid | 59.2 | 62.77 |
| Zm00001d034527_P001 | Maize | plastid | 61.2 | 62.24 |
| CDY21108 | Canola | plastid | 57.86 | 61.35 |
| CDY30020 | Canola | cytosol, plastid | 57.86 | 61.35 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 62.88 | 61.04 |
| Bra040118.1-P | Field mustard | plastid | 57.19 | 60.64 |
| Os07t0572300-01 | Rice | plastid | 54.18 | 57.04 |
| TraesCS5B01G465500.1 | Wheat | plastid | 62.88 | 55.95 |
| HORVU2Hr1G038060.1 | Barley | plastid | 51.84 | 55.36 |
| TraesCS2D01G204300.1 | Wheat | plastid | 52.17 | 55.12 |
| TraesCS2B01G223900.1 | Wheat | plastid | 51.51 | 54.42 |
| TraesCS2A01G196200.1 | Wheat | plastid | 51.51 | 54.42 |
| Zm00001d021869_P001 | Maize | plastid | 49.5 | 52.11 |
| Bra036119.1-P | Field mustard | mitochondrion | 62.54 | 48.95 |
| OQU90135 | Sorghum | plastid | 51.51 | 45.29 |
| CDY59819 | Canola | cytosol, mitochondrion, plasma membrane | 62.88 | 42.34 |
| Solyc12g044670.1.1 | Tomato | plastid | 42.14 | 40.91 |
| Solyc03g121220.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 40.8 | 38.36 |
| Solyc06g074500.1.1 | Tomato | cytosol | 38.13 | 37.62 |
| Solyc03g112130.1.1 | Tomato | cytosol | 39.8 | 37.42 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 37.79 | 35.42 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 34.11 | 34.69 |
| Solyc12g015900.1.1 | Tomato | cytosol | 34.11 | 34.23 |
| Solyc08g028780.1.1 | Tomato | mitochondrion | 34.78 | 30.68 |
| Solyc01g097830.2.1 | Tomato | cytosol, nucleus, peroxisome | 30.1 | 26.01 |
Protein Annotations
| EnsemblPlants:Solyc01g097790.2.1 | EnsemblPlantsGene:Solyc01g097790.2 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF4 | PFAM:PF05910 |
| UniParc:UPI000276820E | UniProt:K4B0G6 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:88500082..88501513
Molecular Weight (calculated)
33562.5 Da
IEP (calculated)
8.794
GRAVY (calculated)
-0.180
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFPSCFGE TGVQVADFSS SGANKAAQNL VTCVYQCKLR GKSCLLNVTW SKNLMGQGLT IGIDDNTNQC LCKVDIKPWL FSKKKGSKTL EAYSRKIDIC
101: WDLSSAKFGS GPEPLEGFYV CVVSERQMIL LLGDMKKEAI KKTSATPAAS GAVFIAKKEH MFGKKVFSTK AQFCDNGRVH DLVIECDTSG TSDPCLVIRV
201: DSKPMMQVKR LKWKFRGNHT MLVDGLGVEV FWDVHNWLFS TSVGSAVFMF KTNISAEKLW ATQPICDPQT LHWSWSQRFR EAQSHDLGFS LFLYAWKNE
101: WDLSSAKFGS GPEPLEGFYV CVVSERQMIL LLGDMKKEAI KKTSATPAAS GAVFIAKKEH MFGKKVFSTK AQFCDNGRVH DLVIECDTSG TSDPCLVIRV
201: DSKPMMQVKR LKWKFRGNHT MLVDGLGVEV FWDVHNWLFS TSVGSAVFMF KTNISAEKLW ATQPICDPQT LHWSWSQRFR EAQSHDLGFS LFLYAWKNE
001: MKDFPSCFGE NGVQVADSSS SSNSGKNAQN LVTCIYQCRI RGRNCLITVT WTKNLMGQSV TVGVDDSCNQ SLCKVEIKPW LFTKRKGSKS LEAYSCNIDV
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
101: FWDLSSAKFG SGPEALGGFY VGVVVDKEMV LLLGDMKKEA FKKTNASPSS LGAVFIAKKE HVFGKRVFAT KAQLFADGKF HDLLIECDTN VTDPCLVVRV
201: DGKTLLQVKR LKWKFRGNDT IVVNKMTVEV LWDVHSWLFG LPTTGNAVFM FRTCQSTEKS LSFSQDVTTT NSKSHSFGFS LILYAWKSE
Arabidopsis Description
At5g28150/T24G3_80 [Source:UniProtKB/TrEMBL;Acc:Q8RX84]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.