Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc09g090230.1.1 | |
| Solyc09g090240.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | Solyc09g090230.1.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | Solyc09g090240.1.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g074500.1.1 | Tomato | cytosol | 57.68 | 60.73 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 52.98 | 56.52 |
| KRH26585 | Soybean | plastid | 49.53 | 52.49 |
| KRH22720 | Soybean | plastid | 48.9 | 51.66 |
| AT2G27770.1 | Thale cress | plastid | 49.84 | 49.69 |
| CDX77134 | Canola | cytosol, plastid | 49.53 | 48.92 |
| KRH25175 | Soybean | cytosol | 48.59 | 48.9 |
| Bra034367.1-P | Field mustard | plastid | 49.53 | 48.62 |
| KRH30504 | Soybean | plastid | 49.53 | 48.62 |
| CDY30531 | Canola | plastid | 48.28 | 46.95 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 40.75 | 44.22 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 39.19 | 42.37 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 38.56 | 41.84 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 39.5 | 41.31 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 37.3 | 38.89 |
| GSMUA_Achr11P... | Banana | plastid | 34.8 | 38.28 |
| Solyc01g097790.2.1 | Tomato | cytosol | 35.42 | 37.79 |
| Solyc09g075960.1.1 | Tomato | nucleus, peroxisome, plasma membrane | 33.86 | 35.64 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 31.35 | 34.72 |
| TraesCS5B01G130100.1 | Wheat | plastid | 31.35 | 31.55 |
| TraesCS5A01G130200.1 | Wheat | plastid | 31.03 | 31.43 |
| TraesCS7D01G277700.1 | Wheat | plastid | 29.47 | 31.13 |
| HORVU7Hr1G058790.3 | Barley | plastid | 29.47 | 31.02 |
| TraesCS7A01G277900.1 | Wheat | plastid | 28.84 | 30.98 |
| TraesCS5D01G137700.1 | Wheat | plastid | 31.03 | 30.84 |
| HORVU5Hr1G041450.1 | Barley | plastid | 30.72 | 30.43 |
| TraesCS7B01G175700.1 | Wheat | plastid | 28.53 | 30.13 |
| OQU82880 | Sorghum | plastid | 29.78 | 28.88 |
| KXG22966 | Sorghum | plastid | 29.47 | 28.75 |
| Os12t0149000-01 | Rice | plastid | 29.47 | 28.66 |
| Zm00001d052520_P001 | Maize | plastid | 28.53 | 28.53 |
| Zm00001d004919_P001 | Maize | plastid | 28.53 | 28.17 |
| Os04t0407500-00 | Rice | cytosol, plastid | 21.94 | 28.0 |
| Zm00001d025337_P001 | Maize | cytosol | 29.78 | 27.54 |
| Solyc03g112130.1.1 | Tomato | cytosol | 27.27 | 27.36 |
| TraesCS4A01G183900.1 | Wheat | plastid | 26.96 | 27.3 |
| TraesCS4B01G134800.1 | Wheat | plastid | 26.65 | 26.9 |
| TraesCS4D01G129600.1 | Wheat | plastid | 26.65 | 26.73 |
| TraesCS2D01G290200.1 | Wheat | cytosol | 27.27 | 26.2 |
| Zm00001d003829_P001 | Maize | cytosol, nucleus, peroxisome | 28.21 | 26.16 |
| TraesCS2B01G308700.1 | Wheat | cytosol | 27.27 | 25.97 |
| Zm00001d031962_P001 | Maize | plastid | 25.71 | 25.95 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 27.27 | 25.66 |
| KXG26216 | Sorghum | cytosol | 29.47 | 25.2 |
| Solyc12g015900.1.1 | Tomato | cytosol | 22.88 | 24.5 |
| Solyc03g121220.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 24.14 | 24.21 |
| Solyc12g044670.1.1 | Tomato | plastid | 23.2 | 24.03 |
| HORVU4Hr1G001870.2 | Barley | cytosol | 25.39 | 23.55 |
| TraesCS4D01G010300.1 | Wheat | cytosol | 24.76 | 22.51 |
| Solyc08g028780.1.1 | Tomato | mitochondrion | 23.82 | 22.42 |
| TraesCS4B01G012200.1 | Wheat | cytosol | 24.76 | 22.38 |
| TraesCS4A01G302100.1 | Wheat | cytosol | 24.14 | 21.75 |
| Solyc01g097830.2.1 | Tomato | cytosol, nucleus, peroxisome | 22.88 | 21.1 |
Protein Annotations
| EnsemblPlants:Solyc11g066930.1.1 | EnsemblPlantsGene:Solyc11g066930.1 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF10 | PFAM:PF05910 |
| SEG:seg | UniParc:UPI000276A157 | UniProt:K4D9V0 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr11:+:52728116..52729075
Molecular Weight (calculated)
36935.6 Da
IEP (calculated)
7.842
GRAVY (calculated)
-0.445
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MRDFASCFSE NAIQTTSCSN YYSKTSCFPQ NSSTTLSTQN NVTCLYNVIL SNKKHLLIIV SWSKTNVSQT LYIQFGDNPS NSFKISAISK KKKGKKSIEF
101: DSDDDDDRKK IEVFWDLCDA RYNSNNNNMF GVEPIDKYCV VVTFDSQIVL SLGHDIEEKI FKNCCTSIAK FSLVSRQEHF VGHTIYSTRA QFCENGSKHD
201: ILISCKGENE GKNIHYQQEQ HNYPVLSICI DKKMVIRVKR LQWNFRGNQS IFLDGLFVDV MWDVHDWFFD STNSGCAVFM FRTRSGLDSR LWLEDRDKLM
301: HKNQDKVEFS FMIYASKTT
101: DSDDDDDRKK IEVFWDLCDA RYNSNNNNMF GVEPIDKYCV VVTFDSQIVL SLGHDIEEKI FKNCCTSIAK FSLVSRQEHF VGHTIYSTRA QFCENGSKHD
201: ILISCKGENE GKNIHYQQEQ HNYPVLSICI DKKMVIRVKR LQWNFRGNQS IFLDGLFVDV MWDVHDWFFD STNSGCAVFM FRTRSGLDSR LWLEDRDKLM
301: HKNQDKVEFS FMIYASKTT
001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT
Arabidopsis Description
At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.