Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G378000.1 | |
| TraesCS6B01G415700.2 | |
| TraesCS6D01G362500.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27770.1 | TraesCS6A01G378000.1 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6B01G415700.2 | AT5G43320.1 | 21798944 |
| AT2G27770.1 | TraesCS6D01G362500.1 | AT5G43320.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G308700.1 | Wheat | cytosol | 98.49 | 97.61 |
| TraesCS2A01G292300.1 | Wheat | cytosol | 97.29 | 95.28 |
| Os04t0407500-00 | Rice | cytosol, plastid | 59.64 | 79.2 |
| Zm00001d025337_P001 | Maize | cytosol | 78.01 | 75.07 |
| Zm00001d003829_P001 | Maize | cytosol, nucleus, peroxisome | 77.41 | 74.71 |
| KXG26216 | Sorghum | cytosol | 79.82 | 71.05 |
| GSMUA_Achr3P03050_001 | Banana | nucleus | 40.66 | 45.92 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 40.96 | 44.59 |
| GSMUA_Achr2P20270_001 | Banana | cytosol | 40.96 | 44.44 |
| GSMUA_Achr8P29560_001 | Banana | nucleus | 38.86 | 43.73 |
| GSMUA_Achr8P07610_001 | Banana | cytosol | 37.05 | 42.71 |
| GSMUA_Achr11P... | Banana | plastid | 34.34 | 39.31 |
| TraesCS5D01G137700.1 | Wheat | plastid | 35.84 | 37.07 |
| VIT_06s0061g01360.t01 | Wine grape | plastid | 32.23 | 35.79 |
| TraesCS4D01G129600.1 | Wheat | plastid | 33.73 | 35.22 |
| VIT_08s0007g03840.t01 | Wine grape | nucleus | 31.93 | 35.22 |
| KRG96144 | Soybean | nucleus | 32.23 | 34.85 |
| TraesCS7D01G277700.1 | Wheat | plastid | 31.33 | 34.44 |
| KRH67854 | Soybean | cytosol | 31.63 | 34.09 |
| KRH26585 | Soybean | plastid | 30.42 | 33.55 |
| KRH22720 | Soybean | plastid | 30.42 | 33.44 |
| TraesCS2D01G204300.1 | Wheat | plastid | 28.01 | 32.86 |
| KRH25175 | Soybean | cytosol | 31.02 | 32.49 |
| TraesCS4D01G010300.1 | Wheat | cytosol | 34.34 | 32.48 |
| TraesCS5D01G467300.1 | Wheat | cytosol, plastid | 30.12 | 32.47 |
| CDX79683 | Canola | cytosol | 30.12 | 31.55 |
| CDX84556 | Canola | cytosol | 30.42 | 31.46 |
| Bra023071.1-P | Field mustard | cytosol | 30.42 | 31.46 |
| PGSC0003DMT400006889 | Potato | nucleus | 14.46 | 31.37 |
| PGSC0003DMT400018411 | Potato | cytosol | 28.61 | 31.35 |
| KRH30504 | Soybean | plastid | 30.42 | 31.08 |
| CDX77134 | Canola | cytosol, plastid | 29.52 | 30.34 |
| AT2G27770.1 | Thale cress | plastid | 28.92 | 30.0 |
| Solyc06g074500.1.1 | Tomato | cytosol | 27.11 | 29.7 |
| AT2G36470.1 | Thale cress | nucleus | 29.22 | 29.66 |
| Bra034367.1-P | Field mustard | plastid | 28.31 | 28.92 |
| Solyc09g009280.1.1 | Tomato | cytosol, peroxisome, plastid | 25.6 | 28.91 |
| CDY30531 | Canola | plastid | 28.31 | 28.66 |
| Solyc11g066930.1.1 | Tomato | nucleus, plastid | 26.2 | 27.27 |
| CDY33155 | Canola | cytosol | 30.42 | 25.25 |
| TraesCS1D01G026300.1 | Wheat | cytosol | 22.89 | 25.0 |
| TraesCS3D01G411600.1 | Wheat | plastid | 24.1 | 24.69 |
| TraesCS6D01G150500.1 | Wheat | nucleus | 21.08 | 22.36 |
| TraesCS5D01G233300.1 | Wheat | plastid | 25.9 | 20.77 |
| TraesCS7D01G147500.1 | Wheat | plastid | 24.1 | 20.36 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G290200.1 | EnsemblPlantsGene:TraesCS2D01G290200 | InterPro:DUF868_pln | PANTHER:PTHR31972 | PANTHER:PTHR31972:SF16 | PFAM:PF05910 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:372321622..372323283
Molecular Weight (calculated)
35163.3 Da
IEP (calculated)
8.393
GRAVY (calculated)
-0.194
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDLVSCFSE HAVRISDVAC SGSAAANAAA AAPTGPADGG GRAAGISAVT TVYRSRLSAS GKDLLVDVTW ARSPDGPALS VAVHDAGAPR HRAAAPRHLH
101: RRKGSGTFTA GSCVVGVFWD YAAARYGAGP EPVSGFYVAV VADAEFVLLL GDMSKGYVER LHGGIPVAES RMARRRERFV GCGCWSTKAR FLESGAEHEI
201: GVGLEGDTEA WVTVDGRKVV QLRRLRWNFR GSHTLILDGG APVDMTWDLH GWLFHAIDPS ASSSSAVFTF HARGASETRL WMDDDGAASS GDSDKEHEKP
301: LAPARGQRQK QGPSGQGFCL LIQGFRSSSK IT
101: RRKGSGTFTA GSCVVGVFWD YAAARYGAGP EPVSGFYVAV VADAEFVLLL GDMSKGYVER LHGGIPVAES RMARRRERFV GCGCWSTKAR FLESGAEHEI
201: GVGLEGDTEA WVTVDGRKVV QLRRLRWNFR GSHTLILDGG APVDMTWDLH GWLFHAIDPS ASSSSAVFTF HARGASETRL WMDDDGAASS GDSDKEHEKP
301: LAPARGQRQK QGPSGQGFCL LIQGFRSSSK IT
001: MRGLAACYSE HAIKVSDTYC SGPSNHSYIS PTLPPSIPDT VTTTYRSNLP SSDKPVSVSL TWSDNLTVVI STPPKSYSVS LRKPKGSRKL TSSSGSLNAE
101: ILWDLSEAEY ENNGPEPIRR FFVVVVVNSE ITLGVGDVDH ERDTSSSSSW RVSKTERFSG TCWLTTKAQF SDVGRKHEIQ IQCGGGGGGG GEEGYLWKVK
201: SPETMSVYVD KRKVFSVKKL KWNFRGNQTM FFDGMLIDMM WDLHDWFYKE TLSSVSTSSS SKTASSSSSS STSSSTPPCA VFMFRRRSGL DSRLWIDEDE
301: QESEMKKNIG SRDEKHSFSL IICASKK
101: ILWDLSEAEY ENNGPEPIRR FFVVVVVNSE ITLGVGDVDH ERDTSSSSSW RVSKTERFSG TCWLTTKAQF SDVGRKHEIQ IQCGGGGGGG GEEGYLWKVK
201: SPETMSVYVD KRKVFSVKKL KWNFRGNQTM FFDGMLIDMM WDLHDWFYKE TLSSVSTSSS SKTASSSSSS STSSSTPPCA VFMFRRRSGL DSRLWIDEDE
301: QESEMKKNIG SRDEKHSFSL IICASKK
Arabidopsis Description
DUF868 family protein, putative (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SJQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.