CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY14873
CDY32954
CDY43608
CDY56353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27770.1	CDY14873	AT5G43320.1	21798944
AT2G27770.1	CDY32954	AT5G43320.1	21798944
AT2G27770.1	CDY43608	AT5G43320.1	21798944
AT2G27770.1	CDY56353	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034367.1-P	Field mustard	plastid	96.95	97.85
CDX77134	Canola	cytosol, plastid	95.73	97.21
AT2G27770.1	Thale cress	plastid	79.57	81.56
VIT_06s0061g01360.t01	Wine grape	plastid	56.71	62.21
KRH26585	Soybean	plastid	53.96	58.8
KRH22720	Soybean	plastid	53.66	58.28
KRH25175	Soybean	cytosol	53.96	55.84
KRH30504	Soybean	plastid	53.96	54.46
Solyc06g074500.1.1	Tomato	cytosol	50.0	54.13
PGSC0003DMT400018411	Potato	cytosol	50.0	54.13
Solyc11g066930.1.1	Tomato	nucleus, plastid	46.95	48.28
GSMUA_Achr3P03050_001	Banana	nucleus	36.59	40.82
GSMUA_Achr8P29560_001	Banana	nucleus	36.28	40.34
GSMUA_Achr2P20270_001	Banana	cytosol	37.5	40.2
GSMUA_Achr8P07610_001	Banana	cytosol	35.06	39.93
GSMUA_Achr11P...	Banana	plastid	35.06	39.66
GSMUA_Achr10P...	Banana	nucleus, plastid	36.59	39.34
CDY21108	Canola	plastid	32.32	37.59
CDX79683	Canola	cytosol	36.28	37.54
CDX84556	Canola	cytosol	36.59	37.38
CDY30020	Canola	cytosol, plastid	31.4	36.52
CDY50761	Canola	cytosol, peroxisome, plastid	31.71	36.24
CDY72112	Canola	cytosol, peroxisome, plastid	30.79	35.82
CDY52485	Canola	plastid	31.1	34.81
CDX86191	Canola	plastid	31.1	34.81
CDY00013	Canola	cytosol, plastid	30.79	34.24
TraesCS7A01G277900.1	Wheat	plastid	28.96	31.99
TraesCS7D01G277700.1	Wheat	plastid	29.27	31.79
HORVU7Hr1G058790.3	Barley	plastid	29.27	31.68
TraesCS7B01G175700.1	Wheat	plastid	28.66	31.13
CDY33155	Canola	cytosol	37.8	31.0
Zm00001d052520_P001	Maize	plastid	29.57	30.41
OQU82880	Sorghum	plastid	30.49	30.4
TraesCS4B01G134800.1	Wheat	plastid	29.27	30.38
Os12t0149000-01	Rice	plastid	30.18	30.18
Zm00001d004919_P001	Maize	plastid	29.57	30.03
HORVU5Hr1G041450.1	Barley	plastid	29.27	29.81
TraesCS5B01G130100.1	Wheat	plastid	28.66	29.65
TraesCS4A01G183900.1	Wheat	plastid	28.35	29.52
TraesCS5A01G130200.1	Wheat	plastid	28.35	29.52
KXG22966	Sorghum	plastid	29.27	29.36
TraesCS4D01G129600.1	Wheat	plastid	28.35	29.25
Zm00001d003829_P001	Maize	cytosol, nucleus, peroxisome	30.18	28.78
TraesCS5D01G137700.1	Wheat	plastid	28.05	28.66
TraesCS2B01G308700.1	Wheat	cytosol	28.96	28.36
TraesCS2D01G290200.1	Wheat	cytosol	28.66	28.31
Zm00001d031962_P001	Maize	plastid	27.13	28.16
Zm00001d025337_P001	Maize	cytosol	29.57	28.12
Os04t0407500-00	Rice	cytosol, plastid	21.34	28.0
CDY00849	Canola	nucleus	24.09	27.15
CDY27882	Canola	nucleus	24.09	27.15
TraesCS2A01G292300.1	Wheat	cytosol	28.05	27.14
HORVU4Hr1G001870.2	Barley	cytosol	28.05	26.74
KXG26216	Sorghum	cytosol	30.18	26.54
TraesCS4A01G302100.1	Wheat	cytosol	28.05	25.99
TraesCS4B01G012200.1	Wheat	cytosol	27.74	25.78
TraesCS4D01G010300.1	Wheat	cytosol	27.13	25.36
CDY51100	Canola	cytosol	25.61	24.71
CDY05690	Canola	mitochondrion, plastid	22.56	24.67
CDY66553	Canola	cytosol	21.04	24.47
CDY48744	Canola	mitochondrion, plastid	22.56	24.34
CDY19961	Canola	plastid	22.56	24.18
CDX85324	Canola	plastid	20.43	24.1
CDX82547	Canola	cytosol	21.04	23.71
CDY00069	Canola	plastid	22.26	23.7
CDX85733	Canola	cytosol, nucleus, plastid	24.7	23.62
CDX86317	Canola	plastid	21.95	23.45
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	31.1	22.97
CDX69793	Canola	nucleus	25.3	22.07
CDX97072	Canola	nucleus	25.0	21.19
CDX76763	Canola	plastid	22.26	20.92
CDY56275	Canola	cytosol	9.76	20.91

Protein Annotations

EnsemblPlants:CDY30531	EnsemblPlantsGene:GSBRNA2T00045252001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF10	PFAM:PF05910
PFscan:PS51257	ProteinID:CDY30531	ProteinID:CDY30531.1	SEG:seg	UniParc:UPI0004EDBE26	UniProt:A0A078GYI5
MapMan:35.2	:	:	:	:	:

Description

BnaA04g16020DBnaA04g16020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYI5]

Coordinates

chrLK032254:+:262667..263834

Molecular Weight (calculated)

36846.7 Da

IEP (calculated)

8.257

GRAVY (calculated)

-0.317

Length

328 amino acids

Sequence
(BLAST)

001: MRDLVSCFSE NSINVTHPLS LSSSSCSNYN TSNACIPPSL IPSIQTSITS IYRITLPSKH LIIKVTWCNK INPSHGLSIS VSSADQNPST SLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEAL WDLSSAKYDS NTCPEPIQSF YVIVLVDARL ALVLGDSSEE TLKKKSLAFD GFDSGKSLIS RQEYFSGNTF YSTKAKFVES
201: GDSHEIVIRC SAEKTEGLKQ SSSTHNHRSP VLSVCIDEKT VTKVKRLQWN FRGNQTIFVD GLLVDLMWDV HDWFFCNPEG CGKAVFMFRT RNGLDSSRLW
301: LEEKKMVQKD EQDKLDFSLL IYACRLEN

Best Arabidopsis Sequence Match ( AT2G27770.1 )
(BLAST)

001: MRDLVSCFSE NSINVTHPLS ISSSSSSCSK YSTNNVCISP SLIPSIQTSI TSIYRITLSK HLIIKVTWCN PHNNNGLSIS VASADQNPST TLKLNTSSRF
101: FRKKKGNKSV DSDLGKIEVF WDLSSAKYDS NLCGPEPING FYVIVLVDGQ MGLLLGDSSE ETLRKKGFSG DIGFDFSLVS RQEHFTGNNT FYSTKVRFVE
201: TGDSHEIVIR CNKETEGLKQ SNHYPVLSVC IDKKTVIKVK RLQWNFRGNQ TIFLDGLLVD LMWDVHDWFF SNQGACGRAV FMFRTRNGLD SSRLWLEEKI
301: VKKDQQDKLD FSLFIYACKT

Arabidopsis Description

At2g27770 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.