CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85324	Canola	plastid	88.27	97.48
Bra037498.1-P	Field mustard	plastid	100.0	95.05
CDY05690	Canola	mitochondrion, plastid	89.9	92.0
CDY00069	Canola	plastid	89.25	88.96
CDY48744	Canola	mitochondrion, plastid	87.62	88.49
CDY19961	Canola	plastid	87.62	87.91
AT5G48270.1	Thale cress	plastid	90.88	86.65
CDY00849	Canola	nucleus	60.26	63.57
CDY27882	Canola	nucleus	60.26	63.57
KRH16994	Soybean	cytosol	56.68	57.05
Solyc12g044670.1.1	Tomato	plastid	56.68	56.49
PGSC0003DMT400069001	Potato	plastid	56.68	56.49
VIT_12s0057g01390.t01	Wine grape	mitochondrion	57.33	56.41
KRH72631	Soybean	cytosol	56.03	56.03
PGSC0003DMT400006698	Potato	mitochondrion	52.77	52.6
GSMUA_AchrUn_...	Banana	cytosol	46.91	51.61
KRG90008	Soybean	plastid	52.77	51.43
Solyc03g121220.2.1	Tomato	cytosol, mitochondrion, nucleus, plastid	52.77	50.94
GSMUA_Achr3P12010_001	Banana	cytosol	43.32	48.19
Zm00001d015796_P001	Maize	cytosol	28.34	45.31
Zm00001d053654_P001	Maize	plastid	42.02	43.58
OQU84582	Sorghum	cytosol	43.65	41.74
TraesCS6B01G189500.1	Wheat	cytosol	40.07	39.42
TraesCS6D01G150500.1	Wheat	nucleus	40.07	39.3
TraesCS6A01G161700.1	Wheat	cytosol	39.74	38.98
HORVU6Hr1G032720.1	Barley	cytosol	39.74	38.73
CDY66553	Canola	cytosol	34.85	37.94
CDX82547	Canola	cytosol	34.85	36.77
CDY50761	Canola	cytosol, peroxisome, plastid	33.22	35.54
CDY21108	Canola	plastid	32.57	35.46
CDY72112	Canola	cytosol, peroxisome, plastid	32.25	35.11
CDX86191	Canola	plastid	33.22	34.81
CDY52485	Canola	plastid	33.22	34.81
CDY30020	Canola	cytosol, plastid	31.92	34.75
CDY00013	Canola	cytosol, plastid	33.22	34.58
Os02t0198800-01	Rice	cytosol, nucleus	40.39	33.33
CDX85733	Canola	cytosol, nucleus, plastid	27.69	24.78
CDY51100	Canola	cytosol	27.04	24.41
CDX77134	Canola	cytosol, plastid	24.43	23.22
CDY59819	Canola	cytosol, mitochondrion, plasma membrane	33.55	23.2
CDX69793	Canola	nucleus	28.34	23.14
CDX97072	Canola	nucleus	28.66	22.74
CDY30531	Canola	plastid	23.45	21.95
CDX76763	Canola	plastid	23.78	20.92
CDX79683	Canola	cytosol	21.5	20.82
CDX84556	Canola	cytosol	21.5	20.56
CDY56275	Canola	cytosol	9.12	18.3
CDY33155	Canola	cytosol	19.22	14.75

Protein Annotations

EnsemblPlants:CDX86317	EnsemblPlantsGene:GSBRNA2T00144437001	InterPro:DUF868_pln	PANTHER:PTHR31972	PANTHER:PTHR31972:SF2	PFAM:PF05910
ProteinID:CDX86317	ProteinID:CDX86317.1	SEG:seg	UniParc:UPI0004EDBCF6	MapMan:35.2	:

Description

BnaA06g30340D

Coordinates

chrLK031845:+:913494..914465

Molecular Weight (calculated)

34529.1 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.242

Length

307 amino acids

Sequence
(BLAST)

001: MLSFRIPSMG TQPAAFAAKI TDTTKTVAQL KSAATPTPHS TVTCGYQAHV AGFFRNVTVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGNF VEVFWDLRSA KLSGNGSPEP VSDYYVAIVS DEEVVLLLGD LKHKAYKRTK SRPALVEGFI SFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSNDEKDQE MWISMDGIVL VHVKNLQWKF RGNVMVLVDR TPVMVYYDVH DWLFGSSEST ASSGLFLFKP DGDSGGGSSP LSRYNSASSG YGPLHEFCLF
301: LYAWKLE

Best Arabidopsis Sequence Match ( AT5G48270.1 )
(BLAST)

001: MLSFRMPSIG SQPTAFAAKI TDNPKTVAQL KSAASPSPHS TVTCGYQAHV AGFFRNVTVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGNF VEVFWDLRSA KLAGNGSPEP VSDYYVAVVS DEEVVLLLGD LKQKAYKRTK SRPALVEGFI YFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSNGAAEPE MWISVDGIVV VNVKNLQWKF RGNQMVMVDR TPVMVYYDVH DWLFASSETA ASSGLFLFKP VPVGAMVDES FSDAEEGDSG GGSSPLSRYN
301: SASSGFGPLH DFCLFLYAWK LE

Arabidopsis Description

DUF868 family protein (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9LUA7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.